Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   MPG34_RS04980 Genome accession   NZ_CP094117
Coordinates   1052225..1053400 (+) Length   391 a.a.
NCBI ID   WP_245105498.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe065     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1047225..1058400
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG34_RS04955 (MPG34_04955) - 1047554..1048450 (+) 897 WP_000697547.1 OriC activity response regulator -
  MPG34_RS04960 (MPG34_04960) - 1048675..1049541 (+) 867 WP_154481460.1 5'-3' exonuclease -
  MPG34_RS04965 (MPG34_04965) - 1049563..1050813 (-) 1251 WP_245105492.1 outer membrane family protein -
  MPG34_RS04970 (MPG34_04970) - 1050981..1051847 (+) 867 WP_245105495.1 DnaJ C-terminal domain-containing protein -
  MPG34_RS04975 (MPG34_04975) - 1051857..1052228 (+) 372 WP_000332994.1 helix-turn-helix transcriptional regulator -
  MPG34_RS04980 (MPG34_04980) rarA 1052225..1053400 (+) 1176 WP_245105498.1 replication-associated recombination protein A Machinery gene
  MPG34_RS04985 (MPG34_04985) fur 1053560..1054012 (+) 453 WP_000824985.1 ferric iron uptake transcriptional regulator -
  MPG34_RS04990 (MPG34_04990) - 1054031..1054528 (-) 498 WP_000780291.1 DUF2147 domain-containing protein -
  MPG34_RS04995 (MPG34_04995) - 1054525..1055061 (-) 537 WP_245105501.1 YhcH/YjgK/YiaL family protein -
  MPG34_RS05000 (MPG34_05000) fliY 1055090..1055953 (-) 864 WP_245105503.1 flagellar motor switch protein FliY -
  MPG34_RS05005 (MPG34_05005) fliM 1055957..1057021 (-) 1065 WP_001919332.1 flagellar motor switch protein FliM -
  MPG34_RS05010 (MPG34_05010) - 1057014..1057790 (-) 777 WP_000602379.1 RNA polymerase sigma factor FliA -
  MPG34_RS05015 (MPG34_05015) - 1057768..1058082 (-) 315 WP_000868000.1 hypothetical protein -

Sequence

Protein


Download         Length: 391 a.a.        Molecular weight: 43857.48 Da        Isoelectric Point: 7.4747

>NTDB_id=575331 MPG34_RS04980 WP_245105498.1 1052225..1053400(+) (rarA) [Helicobacter pylori strain Hpfe065]
MSLTSLLNPKSLEDFLGQEHLIGKDAPLFKALQSKHFPHAFFYGPPGVGKTSLAQIIARMLERPILLFNATDFKLEDLRL
KLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIMEKDHALILGASTQDPNYSLSHAIRSRSFIFELTPLNKSDLDKLCVK
ALTLLKKQIEPSAKTYLLSNSAGDARALLNLLDLSTKIEDPITLETLQSLRPHSLNDGSYSDDTHYNLTSALIKSLRGSD
ENASIYYLACLIAGGENPEFIARRLVVFASEDIGNANPNALNLAASCLFSVKQIGYPEARIILSQCVIYLACSPKSNTAY
RAINQALDYIQKGSLYPIPKHLLPNAKDYLYPHDYNGYVKQDYLEKPLDLVSSQGIGFEKTLLEWLDKIRN

Nucleotide


Download         Length: 1176 bp        

>NTDB_id=575331 MPG34_RS04980 WP_245105498.1 1052225..1053400(+) (rarA) [Helicobacter pylori strain Hpfe065]
ATGAGCCTGACTTCGCTTTTAAACCCAAAAAGCCTAGAAGATTTTTTAGGCCAAGAGCATTTAATAGGGAAAGACGCCCC
CTTATTTAAAGCCCTACAATCCAAACACTTCCCCCACGCCTTTTTCTATGGCCCTCCTGGCGTGGGAAAAACAAGCCTGG
CTCAAATCATCGCTCGCATGCTAGAGCGCCCCATTCTTTTATTTAATGCGACGGATTTCAAATTAGAGGATTTACGCCTT
AAGCTTAAAAATTACCAAAACACCCTTTTAAAACCCGTTGTTTTTATTGATGAAACCCACAGATTGAATAAAACCCAACA
AGAATTTTTACTCCCCATTATGGAAAAAGATCACGCTCTAATCTTAGGGGCTAGCACGCAAGATCCCAATTACAGCCTAA
GCCATGCGATCCGCTCAAGAAGTTTTATTTTTGAATTAACCCCCCTAAACAAGAGCGATTTAGACAAGCTTTGCGTTAAA
GCTTTAACATTGCTCAAAAAACAAATAGAGCCTAGCGCTAAAACCTATCTTTTAAGCAACAGCGCTGGCGATGCTAGAGC
GTTATTAAACCTTTTAGATTTGAGCACTAAGATAGAAGATCCTATCACTTTAGAAACGCTGCAATCCTTACGGCCTCATA
GCCTAAATGATGGATCTTATAGCGATGATACGCATTATAATCTTACTAGCGCATTAATCAAGTCTTTAAGAGGGAGCGAT
GAAAACGCTTCCATCTATTATCTGGCGTGTTTGATTGCTGGCGGGGAAAACCCAGAATTTATCGCCAGAAGGCTGGTGGT
TTTTGCGAGCGAAGATATTGGTAACGCTAACCCAAACGCCCTAAATTTAGCCGCTTCTTGCTTGTTTTCAGTCAAACAAA
TCGGCTACCCTGAAGCGCGCATCATTTTAAGCCAATGCGTGATTTATCTGGCTTGTTCGCCCAAGTCTAACACGGCTTAT
AGAGCGATCAATCAGGCTTTGGATTATATTCAAAAAGGCTCACTCTACCCCATTCCTAAACACCTGCTGCCTAACGCTAA
AGACTACCTTTACCCGCATGATTATAACGGCTATGTCAAACAAGATTATTTGGAAAAACCCCTAGATTTGGTTTCTTCTC
AAGGCATAGGGTTTGAAAAAACCCTTTTAGAATGGCTTGATAAGATAAGAAATTGA

Domains

Predicted by InterProScan.

MgsA AAA+ ATPase C terminal (MgsA_C)

(238-389)

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(7-117)

AAA C-terminal domain (AAA_assoc_2)

(168-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

36.893

100

0.389