Detailed information    

insolico Bioinformatically predicted

Overview

Name   proC   Type   Machinery gene
Locus tag   MPG34_RS01695 Genome accession   NZ_CP094117
Coordinates   333706..334479 (-) Length   257 a.a.
NCBI ID   WP_245106089.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe065     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 328706..339479
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG34_RS01655 (MPG34_01655) - 328738..329706 (-) 969 WP_245106084.1 NAD(P)/FAD-dependent oxidoreductase -
  MPG34_RS01660 (MPG34_01660) ccoS 329732..329923 (-) 192 WP_001090942.1 cbb3-type cytochrome oxidase assembly protein CcoS -
  MPG34_RS01665 (MPG34_01665) - 330060..330641 (+) 582 WP_245106085.1 DedA family protein -
  MPG34_RS01670 (MPG34_01670) - 330731..331225 (+) 495 WP_000516046.1 flavodoxin -
  MPG34_RS01675 (MPG34_01675) ybeY 331287..331715 (+) 429 WP_245106086.1 rRNA maturation RNase YbeY -
  MPG34_RS01680 (MPG34_01680) - 331806..332327 (+) 522 WP_245106087.1 hypothetical protein -
  MPG34_RS01685 (MPG34_01685) - 332344..333044 (+) 701 Protein_326 TauD/TfdA family dioxygenase -
  MPG34_RS01690 (MPG34_01690) - 333059..333553 (-) 495 WP_245106088.1 Fic family protein -
  MPG34_RS01695 (MPG34_01695) proC 333706..334479 (-) 774 WP_245106089.1 pyrroline-5-carboxylate reductase Machinery gene
  MPG34_RS01700 (MPG34_01700) hopL 334493..338164 (-) 3672 WP_245106090.1 Hop family outer membrane protein HopL -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28206.99 Da        Isoelectric Point: 8.6076

>NTDB_id=575317 MPG34_RS01695 WP_245106089.1 333706..334479(-) (proC) [Helicobacter pylori strain Hpfe065]
MEILQFIGYGNMAQAILEGSHEILSKHFILEITGRNPEKIAPFLQEKNIQARIVPYKDAIDIHQKFVFLLFKPYNLKDFN
YQGQAKSVLSALAGVGFEALNNAINSLHYLKCMPNIASKFALSSTAVCEKSPMPLISQKALSIIESFGNCVRVGNEELVD
ASVATNGSALAFLSLVASSLKDAGIREGLNARDSLELVKMSFKGFAKLLEKEHPEMIIEQICTPKGATIEGLSVLEKKGV
RGAFIEACQKSVKKMRL

Nucleotide


Download         Length: 774 bp        

>NTDB_id=575317 MPG34_RS01695 WP_245106089.1 333706..334479(-) (proC) [Helicobacter pylori strain Hpfe065]
ATGGAAATCTTACAATTCATCGGCTATGGGAATATGGCTCAAGCGATTTTAGAAGGCTCTCATGAAATTTTATCCAAGCA
CTTTATTTTAGAAATTACCGGGCGAAACCCTGAAAAAATCGCCCCTTTTTTACAAGAAAAAAACATTCAAGCGCGCATCG
TTCCCTATAAAGACGCTATTGATATACACCAAAAATTCGTGTTTTTACTTTTTAAGCCTTATAACCTTAAGGATTTTAAT
TATCAAGGGCAAGCCAAAAGCGTTTTGAGTGCACTAGCTGGCGTGGGTTTTGAAGCTTTAAATAATGCGATAAATTCTTT
ACATTACCTAAAATGCATGCCCAATATTGCGAGCAAGTTCGCCCTTTCTTCTACGGCGGTGTGCGAAAAATCGCCCATGC
CTTTAATAAGCCAAAAGGCTTTGAGCATTATTGAGAGTTTTGGGAATTGCGTGCGAGTGGGTAATGAAGAGTTGGTGGAT
GCCAGCGTGGCGACAAACGGGAGCGCGCTTGCGTTTTTAAGCTTGGTAGCGAGCAGTTTGAAAGATGCCGGTATTAGAGA
GGGCTTGAACGCTAGAGATTCTTTAGAATTGGTGAAGATGAGTTTTAAAGGCTTTGCCAAGCTGTTAGAAAAAGAACACC
CTGAGATGATTATAGAGCAAATTTGCACCCCTAAAGGCGCAACGATTGAAGGCTTGAGCGTTTTAGAAAAAAAGGGGGTT
AGGGGAGCGTTTATAGAAGCTTGCCAAAAGAGCGTGAAAAAAATGCGCCTCTAA

Domains

Predicted by InterProScan.

NADP oxidoreductase coenzyme F420-dependent (F420_oxidored)

(4-94)

Pyrroline-5-carboxylate reductase dimerisation (P5CR_dimer)

(156-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  proC Campylobacter jejuni subsp. jejuni 81-176

37.795

98.833

0.374