Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   KMZ16_RS00245 Genome accession   NZ_CP076445
Coordinates   44361..44651 (-) Length   96 a.a.
NCBI ID   WP_003226760.1    Uniprot ID   A0A7G9PCZ4
Organism   Bacillus subtilis subsp. subtilis strain ps4100     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 39361..49651
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KMZ16_RS00205 (KMZ16_00205) darA 39384..39713 (+) 330 WP_003242755.1 cyclic di-AMP receptor DarA -
  KMZ16_RS00210 (KMZ16_00210) yaaR 39726..40166 (+) 441 WP_009966249.1 YaaR family protein -
  KMZ16_RS00215 (KMZ16_00215) holB 40178..41167 (+) 990 WP_003244417.1 DNA polymerase III subunit delta' -
  KMZ16_RS00220 (KMZ16_00220) ricT 41170..41997 (+) 828 WP_003243571.1 competence/sporulation regulator complex protein RicT -
  KMZ16_RS00225 (KMZ16_00225) yabA 42012..42371 (+) 360 WP_003218308.1 replication initiation-control protein YabA -
  KMZ16_RS00230 (KMZ16_00230) trmNF 42430..43173 (+) 744 WP_003244526.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  KMZ16_RS00235 (KMZ16_00235) yazA 43160..43459 (+) 300 WP_003242983.1 GIY-YIG nuclease family protein -
  KMZ16_RS00240 (KMZ16_00240) rsmI 43434..44312 (+) 879 WP_257182301.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  KMZ16_RS00245 (KMZ16_00245) abrB 44361..44651 (-) 291 WP_003226760.1 transition state genes transcriptional regulator AbrB Regulator
  KMZ16_RS00250 (KMZ16_00250) metG 45146..47140 (+) 1995 WP_029726394.1 methionine--tRNA ligase -
  KMZ16_RS00255 (KMZ16_00255) dayD 47220..47987 (+) 768 WP_029726393.1 TatD family hydrolase -
  KMZ16_RS00260 (KMZ16_00260) yabE 48143..49456 (+) 1314 WP_029726392.1 ubiquitin-like domain-containing protein -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10772.62 Da        Isoelectric Point: 6.3482

>NTDB_id=575305 KMZ16_RS00245 WP_003226760.1 44361..44651(-) (abrB) [Bacillus subtilis subsp. subtilis strain ps4100]
MFMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSKEG
AEQIISEIQNQLQNLK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=575305 KMZ16_RS00245 WP_003226760.1 44361..44651(-) (abrB) [Bacillus subtilis subsp. subtilis strain ps4100]
ATGTTTATGAAATCTACTGGTATTGTACGTAAAGTTGATGAATTAGGACGTGTAGTTATTCCTATCGAACTGCGTCGTAC
TCTTGGAATCGCAGAAAAAGATGCTCTTGAAATCTATGTTGATGATGAAAAAATCATCCTTAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACTGGTGAAGTTTCTGATGATAACCTTAAACTTGCAGGCGGTAAATTGGTTCTTAGTAAAGAAGGC
GCTGAGCAAATCATCAGCGAAATCCAAAACCAGCTTCAAAACCTTAAATAA

Domains

Predicted by InterProScan.

AbrB C-terminal domain (AbrB_C)

(55-90)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

100

100

1