Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   MPG07_RS04955 Genome accession   NZ_CP094116
Coordinates   1047139..1048314 (+) Length   391 a.a.
NCBI ID   WP_245045057.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe066     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1042139..1053314
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG07_RS04930 (MPG07_04930) - 1042467..1043363 (+) 897 WP_000697547.1 OriC activity response regulator -
  MPG07_RS04935 (MPG07_04935) - 1043589..1044455 (+) 867 WP_245046621.1 5'-3' exonuclease -
  MPG07_RS04940 (MPG07_04940) - 1044477..1045727 (-) 1251 WP_245045048.1 outer membrane family protein -
  MPG07_RS04945 (MPG07_04945) - 1045895..1046761 (+) 867 WP_245045056.1 DnaJ C-terminal domain-containing protein -
  MPG07_RS04950 (MPG07_04950) - 1046771..1047142 (+) 372 WP_000333004.1 helix-turn-helix transcriptional regulator -
  MPG07_RS04955 (MPG07_04955) rarA 1047139..1048314 (+) 1176 WP_245045057.1 replication-associated recombination protein A Machinery gene
  MPG07_RS04960 (MPG07_04960) fur 1048474..1048926 (+) 453 WP_000824985.1 ferric iron uptake transcriptional regulator -
  MPG07_RS04965 (MPG07_04965) - 1048946..1049443 (-) 498 WP_000780295.1 DUF2147 domain-containing protein -
  MPG07_RS04970 (MPG07_04970) - 1049440..1049976 (-) 537 WP_245045058.1 YhcH/YjgK/YiaL family protein -
  MPG07_RS04975 (MPG07_04975) fliY 1050004..1050867 (-) 864 WP_245045059.1 flagellar motor switch protein FliY -
  MPG07_RS04980 (MPG07_04980) fliM 1050871..1051935 (-) 1065 WP_000763605.1 flagellar motor switch protein FliM -
  MPG07_RS04985 (MPG07_04985) - 1051928..1052704 (-) 777 WP_245045060.1 RNA polymerase sigma factor FliA -
  MPG07_RS04990 (MPG07_04990) - 1052682..1052996 (-) 315 WP_000867999.1 hypothetical protein -

Sequence

Protein


Download         Length: 391 a.a.        Molecular weight: 43873.47 Da        Isoelectric Point: 7.8110

>NTDB_id=575290 MPG07_RS04955 WP_245045057.1 1047139..1048314(+) (rarA) [Helicobacter pylori strain Hpfe066]
MSLTSLLNPKSLEDFLGQEHLIGKDAPLFKALQSKHFPHAFFYGPPGVGKTSLAQIIARMLERPILLFNATDFKLEDLRL
KLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIMEKDHALILGASTQDPNYSLSHAIRSRSFIFELTPLNKSDLDKLCAK
ALTLLKKQIEPSAKTYLLNNSTGDARALLNLLDLSAKIEDPITLETLQSLRPHSPNDGSYSDDTHYNLTSALIKSLRGSD
ENASIYYLARLIAGGENPEFIARRLVIFASEDIGNANPNALNLAASCLLSVKQIGYPEARIILSQCVIYLACSPKSNTAY
RAINQALDYIQKGSLYPIPKHLLPNAKDYLYPHDYNGYVKQDYLEKPLDLVSSQGIGFEKTLLEWLDKIRN

Nucleotide


Download         Length: 1176 bp        

>NTDB_id=575290 MPG07_RS04955 WP_245045057.1 1047139..1048314(+) (rarA) [Helicobacter pylori strain Hpfe066]
ATGAGCCTGACTTCGCTTTTAAACCCAAAAAGCCTAGAAGATTTTTTAGGCCAAGAGCATCTAATAGGCAAAGACGCCCC
CTTATTTAAAGCCCTACAATCCAAACACTTCCCTCATGCCTTTTTCTATGGCCCTCCTGGCGTGGGTAAAACAAGCCTGG
CTCAAATCATCGCCCGCATGCTAGAGCGCCCCATTCTTTTATTCAATGCGACGGATTTCAAATTAGAGGATTTACGCCTT
AAACTTAAAAATTACCAAAACACCCTTTTAAAACCCGTTGTTTTTATTGATGAAACCCACAGATTGAATAAAACCCAACA
AGAATTTTTACTCCCCATTATGGAAAAAGATCACGCTTTAATCTTAGGGGCTAGCACGCAAGATCCCAATTACAGCCTAA
GCCATGCGATCCGCTCAAGAAGTTTTATTTTTGAATTAACCCCCCTAAACAAGAGCGATTTAGACAAGCTTTGCGCTAAA
GCTTTAACATTACTCAAAAAACAAATAGAGCCTAGCGCTAAAACCTATCTTTTAAACAACAGCACTGGCGATGCTAGAGC
GTTATTAAACCTTTTAGATTTGAGCGCTAAAATAGAAGATCCTATCACTTTAGAAACGCTGCAATCCTTACGGCCTCATA
GCCCAAATGACGGATCTTATAGCGATGATACGCATTATAATCTTACTAGCGCTCTAATCAAGTCTTTAAGAGGGAGCGAT
GAAAACGCTTCCATCTATTATCTGGCGCGCTTGATTGCTGGCGGGGAAAATCCGGAATTTATCGCCAGAAGGCTAGTGAT
TTTTGCGAGCGAAGATATTGGTAACGCTAACCCAAACGCCCTTAATTTAGCCGCTTCTTGCTTGCTTTCAGTCAAACAAA
TCGGCTACCCTGAAGCGCGCATCATTTTAAGCCAGTGCGTGATTTATCTGGCTTGTTCGCCCAAGTCTAACACGGCCTAT
AGAGCGATCAATCAGGCTTTGGATTATATTCAAAAAGGCTCACTCTACCCCATTCCTAAACACCTGCTGCCTAACGCTAA
AGACTACCTTTACCCGCATGATTATAACGGCTATGTCAAACAAGATTATTTGGAAAAACCCCTAGATTTGGTTTCTTCTC
AAGGCATAGGGTTTGAAAAAACCCTTTTAGAATGGCTTGATAAGATAAGAAATTGA

Domains

Predicted by InterProScan.

AAA C-terminal domain (AAA_assoc_2)

(168-237)

MgsA AAA+ ATPase C terminal (MgsA_C)

(238-389)

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(7-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

37.136

100

0.391