Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   MPG80_RS04925 Genome accession   NZ_CP094115
Coordinates   1048360..1049535 (+) Length   391 a.a.
NCBI ID   WP_245055048.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe068     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1043360..1054535
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG80_RS04900 (MPG80_04900) - 1043647..1044543 (+) 897 WP_180660458.1 OriC activity response regulator -
  MPG80_RS04905 (MPG80_04905) - 1044769..1045635 (+) 867 WP_245056302.1 5'-3' exonuclease -
  MPG80_RS04910 (MPG80_04910) - 1045698..1046948 (-) 1251 WP_245055044.1 outer membrane family protein -
  MPG80_RS04915 (MPG80_04915) - 1047116..1047982 (+) 867 WP_245055046.1 DnaJ C-terminal domain-containing protein -
  MPG80_RS04920 (MPG80_04920) - 1047992..1048363 (+) 372 WP_000332994.1 helix-turn-helix transcriptional regulator -
  MPG80_RS04925 (MPG80_04925) rarA 1048360..1049535 (+) 1176 WP_245055048.1 replication-associated recombination protein A Machinery gene
  MPG80_RS04930 (MPG80_04930) fur 1049695..1050147 (+) 453 WP_000824985.1 ferric iron uptake transcriptional regulator -
  MPG80_RS04935 (MPG80_04935) - 1050167..1050664 (-) 498 WP_058055244.1 DUF2147 domain-containing protein -
  MPG80_RS04940 (MPG80_04940) - 1050661..1051197 (-) 537 WP_245055050.1 YhcH/YjgK/YiaL family protein -
  MPG80_RS04945 (MPG80_04945) fliY 1051226..1052089 (-) 864 WP_245055052.1 flagellar motor switch protein FliY -
  MPG80_RS04950 (MPG80_04950) fliM 1052093..1053157 (-) 1065 WP_000763603.1 flagellar motor switch protein FliM -
  MPG80_RS04955 (MPG80_04955) - 1053150..1053926 (-) 777 WP_245055054.1 RNA polymerase sigma factor FliA -
  MPG80_RS04960 (MPG80_04960) - 1053904..1054218 (-) 315 WP_000868000.1 hypothetical protein -

Sequence

Protein


Download         Length: 391 a.a.        Molecular weight: 43980.54 Da        Isoelectric Point: 7.8110

>NTDB_id=575250 MPG80_RS04925 WP_245055048.1 1048360..1049535(+) (rarA) [Helicobacter pylori strain Hpfe068]
MSLTSLLNPKSLEDFLGQEHLIGKDAPLFKALQSKHFPHAFFYGPPGVGKTSLAQIIARMLERPILLFNATDFKLEDLRL
KLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIMEKDHALILGASTQDPNYSLSHAIRSRSFIFELTPLNKSDLDKLCTK
ALTWLKKQIEPSAKTYLLNNSAGDARALLNLLDLSAKIEDPITLETLQSLRPHSPNDGSYSDDTHYNLTSALIKSLRGSD
ENASIYYLARLIAGGENPEFIARRLVIFASEDIGNANPNALNLAASCLFSVKQIGYPEARIILSQCVIYLACSPKSNTAY
RAINQALDYIQKGSLYPIPKHLLPNAKDYLYPHDYNGYVKQDYLEKPLDLVSSQGIGFEKTLLEWLDKIRN

Nucleotide


Download         Length: 1176 bp        

>NTDB_id=575250 MPG80_RS04925 WP_245055048.1 1048360..1049535(+) (rarA) [Helicobacter pylori strain Hpfe068]
ATGAGCCTGACTTCGCTTTTAAACCCAAAAAGCCTAGAAGATTTTTTAGGCCAAGAGCATTTAATAGGGAAAGACGCCCC
CTTATTTAAAGCCCTACAATCCAAACACTTCCCCCACGCCTTTTTCTATGGCCCTCCTGGCGTGGGAAAAACAAGCTTGG
CTCAAATCATCGCCCGCATGCTAGAGCGCCCCATTCTTTTATTCAATGCGACGGATTTCAAATTAGAGGATTTACGCCTT
AAACTTAAAAATTACCAAAACACCCTTTTAAAACCGGTTGTTTTTATTGATGAAACCCACAGATTGAATAAAACCCAACA
AGAATTTTTACTCCCCATTATGGAAAAAGATCACGCTTTAATCTTAGGGGCTAGCACGCAAGATCCTAATTACAGCTTAA
GCCATGCGATCCGCTCAAGAAGTTTTATTTTTGAATTAACCCCCCTAAACAAGAGCGATTTAGACAAGCTTTGCACTAAA
GCTTTAACATGGCTCAAAAAACAAATAGAGCCTAGCGCTAAAACCTATCTTTTAAACAACAGCGCTGGCGATGCTAGAGC
GTTATTAAACCTTTTAGATTTGAGCGCTAAAATAGAAGATCCTATCACTTTAGAAACGCTGCAATCCTTACGGCCTCATA
GCCCAAATGACGGATCTTATAGCGATGATACACATTATAATCTTACTAGTGCTTTAATCAAGTCTTTAAGAGGGAGCGAT
GAAAACGCTTCCATCTACTATCTGGCGCGCTTGATTGCTGGCGGGGAAAATCCGGAATTTATCGCCAGAAGGCTAGTGAT
TTTTGCGAGCGAAGATATTGGTAACGCTAACCCAAACGCCCTTAATTTAGCCGCTTCTTGCTTGTTTTCAGTCAAACAAA
TCGGCTACCCTGAAGCGCGCATCATTTTAAGCCAATGCGTGATTTATCTGGCTTGCTCGCCCAAGTCTAACACGGCTTAT
AGAGCGATCAATCAGGCTTTGGATTATATTCAAAAAGGCTCACTCTACCCCATTCCTAAACACTTGCTGCCTAACGCTAA
AGACTACCTTTACCCGCATGATTATAACGGCTATGTCAAACAAGATTATTTGGAAAAACCCCTAGATTTGGTTTCTTCTC
AAGGCATAGGGTTTGAAAAAACCCTTTTAGAATGGCTTGATAAGATAAGAAATTGA

Domains

Predicted by InterProScan.

AAA C-terminal domain (AAA_assoc_2)

(168-237)

MgsA AAA+ ATPase C terminal (MgsA_C)

(238-389)

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(7-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

37.136

100

0.391