Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   KOM05_RS08125 Genome accession   NZ_CP076414
Coordinates   1607281..1608180 (+) Length   299 a.a.
NCBI ID   WP_032874887.1    Uniprot ID   -
Organism   Bacillus velezensis strain NJ13     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1602281..1613180
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KOM05_RS08105 (KOM05_08030) - 1602971..1604674 (+) 1704 WP_032874885.1 hypothetical protein -
  KOM05_RS08110 (KOM05_08035) - 1604671..1604952 (+) 282 WP_007409769.1 FlhB-like flagellar biosynthesis protein -
  KOM05_RS08115 (KOM05_08040) sucC 1605127..1606284 (+) 1158 WP_003154283.1 ADP-forming succinate--CoA ligase subunit beta -
  KOM05_RS08120 (KOM05_08045) sucD 1606313..1607215 (+) 903 WP_003154281.1 succinate--CoA ligase subunit alpha -
  KOM05_RS08125 (KOM05_08050) dprA 1607281..1608180 (+) 900 WP_032874887.1 DNA-processing protein DprA Machinery gene
  KOM05_RS08130 (KOM05_08055) topA 1608362..1610437 (+) 2076 WP_029325907.1 type I DNA topoisomerase -
  KOM05_RS08135 (KOM05_08060) trmFO 1610502..1611809 (+) 1308 WP_012117550.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  KOM05_RS08140 (KOM05_08065) xerC 1611879..1612796 (+) 918 WP_007409774.1 tyrosine recombinase XerC -

Sequence

Protein


Download         Length: 299 a.a.        Molecular weight: 32853.99 Da        Isoelectric Point: 8.1570

>NTDB_id=575226 KOM05_RS08125 WP_032874887.1 1607281..1608180(+) (dprA) [Bacillus velezensis strain NJ13]
MDQASRCLMVCSINQIISPSLLLKWWKADHSLSFLPDPHPLTVLSEGKTAPEAIFREIERKNSELDEVLSDYRREGITVI
PISSSRYPTWLKAIYDPPAVLYAKGNTLLLEKGRKIGIVGTRKPTEDGIKAVGHLSAELSKKGWVIVSGLASGIDGLSHK
ASIRAKGLTIGVIAGGFHHIYPRENLLLAEYMAEHHLLLSEHPPETKPKKWHFPMRNRIISGLSEGIVVVQGKEKSGSLI
TAYQALDQGREVFAVPGSIFNPYSGGPIKLIQEGAKAVLCAEDIDGELTARCVQYTEPF

Nucleotide


Download         Length: 900 bp        

>NTDB_id=575226 KOM05_RS08125 WP_032874887.1 1607281..1608180(+) (dprA) [Bacillus velezensis strain NJ13]
TTGGATCAAGCATCGCGCTGTTTAATGGTCTGCAGTATTAATCAAATCATTTCCCCGTCTCTTCTATTAAAATGGTGGAA
AGCTGATCACTCTCTGTCTTTTTTACCGGATCCGCATCCATTAACTGTTTTATCAGAAGGGAAAACAGCCCCGGAAGCAA
TTTTTCGGGAAATAGAGCGCAAGAATTCGGAACTTGATGAAGTTCTGTCCGATTACCGCCGCGAAGGCATTACTGTCATT
CCGATTTCGTCAAGCCGCTATCCAACATGGCTTAAAGCGATTTATGATCCGCCGGCTGTCTTGTATGCAAAAGGGAACAC
GCTGCTTCTTGAAAAAGGCAGAAAAATCGGGATTGTAGGAACGCGGAAACCGACGGAAGACGGAATAAAAGCGGTTGGGC
ATCTTTCCGCCGAACTCTCAAAAAAAGGCTGGGTCATTGTAAGCGGGCTTGCATCCGGTATAGACGGATTGTCTCATAAG
GCGAGCATCAGGGCAAAAGGGCTTACGATCGGCGTGATAGCCGGCGGATTCCATCACATCTATCCCCGGGAAAATCTCCT
GTTAGCAGAATACATGGCTGAACACCATCTCCTACTCTCAGAACATCCTCCTGAAACAAAGCCGAAAAAATGGCACTTTC
CGATGAGAAACCGCATAATCAGCGGACTAAGTGAAGGAATTGTGGTCGTGCAGGGAAAAGAAAAAAGCGGTTCATTAATC
ACAGCTTACCAGGCTCTCGATCAAGGCAGAGAGGTATTTGCCGTTCCGGGTTCCATATTTAATCCATATTCCGGAGGACC
TATAAAACTCATTCAAGAAGGGGCGAAAGCTGTATTATGCGCAGAGGATATTGACGGAGAGCTGACCGCCCGATGCGTTC
AGTATACGGAACCCTTTTGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(73-278)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

70.569

100

0.706
  dprA Lactococcus lactis subsp. cremoris KW2

42.045

88.294

0.371