Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   MPG48_RS05085 Genome accession   NZ_CP094113
Coordinates   1073966..1075141 (+) Length   391 a.a.
NCBI ID   WP_245064842.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe069     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1068966..1080141
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG48_RS05060 (MPG48_05060) - 1069252..1070148 (+) 897 WP_245064837.1 response regulator -
  MPG48_RS05065 (MPG48_05065) - 1070373..1071239 (+) 867 WP_080127562.1 5'-3' exonuclease -
  MPG48_RS05070 (MPG48_05070) - 1071304..1072554 (-) 1251 WP_245064839.1 outer membrane family protein -
  MPG48_RS05075 (MPG48_05075) - 1072722..1073588 (+) 867 WP_245064841.1 DnaJ C-terminal domain-containing protein -
  MPG48_RS05080 (MPG48_05080) - 1073598..1073969 (+) 372 WP_000333001.1 helix-turn-helix transcriptional regulator -
  MPG48_RS05085 (MPG48_05085) rarA 1073966..1075141 (+) 1176 WP_245064842.1 replication-associated recombination protein A Machinery gene
  MPG48_RS05090 (MPG48_05090) fur 1075300..1075752 (+) 453 WP_000824985.1 ferric iron uptake transcriptional regulator -
  MPG48_RS05095 (MPG48_05095) - 1075772..1076269 (-) 498 WP_000780291.1 DUF2147 domain-containing protein -
  MPG48_RS05100 (MPG48_05100) - 1076266..1076802 (-) 537 WP_245064844.1 YhcH/YjgK/YiaL family protein -
  MPG48_RS05105 (MPG48_05105) fliY 1076831..1077694 (-) 864 WP_245064846.1 flagellar motor switch protein FliY -
  MPG48_RS05110 (MPG48_05110) fliM 1077698..1078762 (-) 1065 WP_000763605.1 flagellar motor switch protein FliM -
  MPG48_RS05115 (MPG48_05115) - 1078755..1079531 (-) 777 WP_060758252.1 RNA polymerase sigma factor FliA -
  MPG48_RS05120 (MPG48_05120) - 1079509..1079823 (-) 315 WP_000867999.1 hypothetical protein -

Sequence

Protein


Download         Length: 391 a.a.        Molecular weight: 43909.54 Da        Isoelectric Point: 8.1219

>NTDB_id=575211 MPG48_RS05085 WP_245064842.1 1073966..1075141(+) (rarA) [Helicobacter pylori strain Hpfe069]
MSLTSLLNPKSLEDFLGQEHLIGKDAPLFKALQSKHFPHAFFYGPPGVGKTSLAQIIARMLERPILLFNATDFKLEDLRL
KLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIMEKDHALILGASTQDPNYSLSHAIRSRSFIFELTPLKKSDLDKLCAK
ALTLLKKQIEPSAKTYLLNNSAGDARALLNLLDLSAKIEDPITLETLQSLRPHSLNDGSYSDDTHYNLTSALIKSLRGSD
ENASIYYLARLIAGGENPEFIARRLVVFASEDIGNANPNALNLASSCLFSVKQIGYPEARIILSQCVIYLACSPKSNTAY
RAINQALDYIQKGSLYPIPKHLLPNAKDYLYPHDYNGYVKQDYLEKPLDLVSSQGIGFEKTLLEWLDKIRN

Nucleotide


Download         Length: 1176 bp        

>NTDB_id=575211 MPG48_RS05085 WP_245064842.1 1073966..1075141(+) (rarA) [Helicobacter pylori strain Hpfe069]
ATGAGCCTGACTTCGCTTTTAAACCCAAAAAGCCTAGAAGATTTTTTAGGCCAAGAGCATCTAATAGGCAAAGACGCCCC
CTTATTTAAAGCCCTACAATCCAAACACTTCCCCCATGCTTTTTTCTATGGCCCTCCTGGCGTGGGAAAAACAAGCCTGG
CTCAAATCATCGCCCGCATGCTAGAGCGCCCCATTCTTTTATTTAATGCGACGGATTTCAAATTAGAGGATTTACGCCTT
AAACTTAAAAATTACCAAAACACCCTTTTAAAACCGGTTGTTTTTATTGATGAAACCCACAGATTGAATAAAACCCAACA
AGAATTTTTACTCCCCATTATGGAAAAAGATCACGCTTTAATCTTAGGGGCTAGCACGCAAGATCCCAATTACAGCCTAA
GCCATGCGATCCGCTCAAGAAGTTTTATTTTTGAATTAACCCCCCTAAAAAAGAGCGATTTAGACAAACTTTGTGCTAAA
GCTTTAACATTACTCAAAAAACAAATAGAGCCTAGCGCTAAAACCTATCTTTTAAACAACAGCGCTGGCGATGCTAGAGC
GTTATTAAACCTTTTAGATTTGAGCGCTAAGATAGAAGATCCTATCACTTTAGAAACGCTGCAATCCTTACGGCCTCATA
GCCTAAATGATGGATCTTATAGCGATGATACGCATTATAATCTTACTAGCGCTCTAATCAAGTCTTTAAGAGGGAGCGAT
GAAAACGCTTCCATCTATTATCTAGCGCGCTTGATTGCTGGCGGGGAAAACCCGGAATTTATCGCCAGAAGGCTGGTGGT
TTTTGCGAGCGAAGATATTGGTAACGCTAACCCAAACGCCCTAAATTTAGCCTCTTCTTGCTTGTTTTCAGTCAAACAAA
TCGGCTACCCTGAAGCGCGCATCATTTTAAGCCAATGCGTGATTTATCTGGCTTGTTCGCCCAAGTCTAACACGGCCTAT
AGAGCGATCAATCAGGCTTTGGATTATATTCAAAAAGGCTCACTCTACCCCATTCCTAAACACCTGCTGCCTAACGCTAA
AGACTACCTTTACCCGCATGATTATAACGGCTATGTCAAACAAGATTATTTGGAAAAACCCCTAGATTTGGTTTCTTCTC
AAGGCATAGGGTTTGAAAAAACCCTTTTAGAATGGCTTGATAAGATAAGAAATTGA

Domains

Predicted by InterProScan.

AAA C-terminal domain (AAA_assoc_2)

(168-237)

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(7-117)

MgsA AAA+ ATPase C terminal (MgsA_C)

(238-389)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

37.379

100

0.394