Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   ZHX2020_RS19830 Genome accession   NZ_CP076409
Coordinates   3732231..3733010 (+) Length   259 a.a.
NCBI ID   WP_003220850.1    Uniprot ID   G4NSM6
Organism   Bacillus sp. ZHX3     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3727231..3738010
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ZHX2020_RS19810 (ZHX2020_19675) trmFO 3727924..3729231 (+) 1308 WP_003244725.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  ZHX2020_RS19815 (ZHX2020_19680) xerC 3729299..3730213 (+) 915 WP_014479777.1 tyrosine recombinase XerC -
  ZHX2020_RS19820 (ZHX2020_19685) clpQ 3730226..3730771 (+) 546 WP_003238555.1 ATP-dependent protease subunit ClpQ -
  ZHX2020_RS19825 (ZHX2020_19690) hslU 3730788..3732191 (+) 1404 WP_014476801.1 HslU--HslV peptidase ATPase subunit -
  ZHX2020_RS19830 (ZHX2020_19695) codY 3732231..3733010 (+) 780 WP_003220850.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  ZHX2020_RS19835 (ZHX2020_19700) flgB 3733390..3733779 (+) 390 WP_014479778.1 flagellar basal body rod protein FlgB -
  ZHX2020_RS19840 (ZHX2020_19705) flgC 3733779..3734231 (+) 453 WP_014479779.1 flagellar basal body rod protein FlgC -
  ZHX2020_RS19845 (ZHX2020_19710) fliE 3734242..3734562 (+) 321 WP_003238544.1 flagellar hook-basal body complex protein FliE -
  ZHX2020_RS19850 (ZHX2020_19715) fliF 3734608..3736205 (+) 1598 Protein_3855 flagellar basal-body MS-ring/collar protein FliF -
  ZHX2020_RS19855 (ZHX2020_19720) fliG 3736218..3737234 (+) 1017 WP_003231981.1 flagellar motor switch protein FliG -
  ZHX2020_RS19860 (ZHX2020_19725) fliH 3737227..3737979 (+) 753 WP_014479782.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29013.22 Da        Isoelectric Point: 4.6514

>NTDB_id=575172 ZHX2020_RS19830 WP_003220850.1 3732231..3733010(+) (codY) [Bacillus sp. ZHX3]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTKNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFNDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=575172 ZHX2020_RS19830 WP_003220850.1 3732231..3733010(+) (codY) [Bacillus sp. ZHX3]
ATGGCTTTATTACAAAAAACAAGAATTATTAACTCCATGCTGCAAGCTGCGGCAGGGAAACCGGTAAACTTCAAGGAAAT
GGCGGAGACGCTGCGGGATGTAATTGATTCCAATATTTTCGTTGTAAGCCGCAGAGGGAAACTCCTTGGGTATTCTATTA
ACCAGCAAATTGAAAATGATCGTATGAAAAAAATGCTTGAGGATCGTCAATTCCCTGAAGAATATACGAAAAATCTGTTT
AATGTCCCTGAAACATCTTCTAACTTGGATATTAATAGTGAATATACTGCTTTCCCTGTTGAGAACAGAGACCTGTTTCA
AGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAACACTTATTCTTTCGCGTTTACAAGATC
AATTCAATGACGATGACTTAATTCTAGCTGAATACGGCGCAACAGTTGTCGGAATGGAAATCCTAAGAGAAAAAGCAGAA
GAAATTGAAGAGGAAGCAAGAAGCAAAGCTGTCGTACAAATGGCTATCAGCTCGCTTTCTTACAGTGAGCTTGAAGCAAT
TGAGCACATTTTTGAGGAGCTTGACGGAAATGAAGGTCTTCTTGTTGCAAGTAAAATTGCTGACCGTGTCGGCATTACCC
GTTCTGTTATTGTGAACGCACTCAGAAAGCTGGAGAGCGCCGGTGTTATCGAGTCTAGATCATTAGGAATGAAAGGTACT
TATATCAAGGTACTAAACAACAAATTCTTAATTGAATTAGAAAATCTAAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NSM6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

100

100

1
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.451

98.456

0.467