Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   I653_RS08370 Genome accession   NC_020832
Coordinates   1649396..1650175 (+) Length   259 a.a.
NCBI ID   WP_003220850.1    Uniprot ID   G4NSM6
Organism   Bacillus subtilis subsp. subtilis str. BAB-1     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1644396..1655175
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I653_RS08350 (I653_08290) trmFO 1645089..1646396 (+) 1308 WP_015483222.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  I653_RS08355 (I653_08295) xerC 1646464..1647378 (+) 915 WP_015383656.1 tyrosine recombinase XerC -
  I653_RS08360 (I653_08300) clpQ 1647391..1647936 (+) 546 WP_003238555.1 ATP-dependent protease subunit ClpQ -
  I653_RS08365 (I653_08305) hslU 1647953..1649356 (+) 1404 WP_014476801.1 HslU--HslV peptidase ATPase subunit -
  I653_RS08370 (I653_08310) codY 1649396..1650175 (+) 780 WP_003220850.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  I653_RS08375 (I653_08315) flgB 1650555..1650944 (+) 390 WP_003245656.1 flagellar basal body rod protein FlgB -
  I653_RS08380 (I653_08320) flgC 1650944..1651396 (+) 453 WP_014479779.1 flagellar basal body rod protein FlgC -
  I653_RS08385 (I653_08325) fliE 1651407..1651727 (+) 321 WP_003238544.1 flagellar hook-basal body complex protein FliE -
  I653_RS08390 (I653_08330) fliF 1651773..1653383 (+) 1611 WP_015483223.1 flagellar basal-body MS-ring/collar protein FliF -
  I653_RS08395 (I653_08335) fliG 1653396..1654412 (+) 1017 WP_003231981.1 flagellar motor switch protein FliG -
  I653_RS08400 (I653_08340) fliH 1654405..1655157 (+) 753 WP_015383659.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29013.22 Da        Isoelectric Point: 4.6514

>NTDB_id=57514 I653_RS08370 WP_003220850.1 1649396..1650175(+) (codY) [Bacillus subtilis subsp. subtilis str. BAB-1]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTKNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFNDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=57514 I653_RS08370 WP_003220850.1 1649396..1650175(+) (codY) [Bacillus subtilis subsp. subtilis str. BAB-1]
ATGGCTTTATTACAAAAAACAAGAATTATTAACTCCATGCTGCAAGCTGCGGCAGGGAAACCGGTTAACTTCAAGGAAAT
GGCGGAGACGCTGCGGGATGTAATTGATTCCAATATTTTCGTTGTAAGCCGCAGAGGGAAACTCCTTGGGTATTCTATTA
ACCAGCAAATTGAAAATGATCGTATGAAAAAAATGCTTGAGGATCGTCAATTCCCTGAAGAATATACGAAAAATCTGTTT
AATGTCCCTGAAACATCTTCTAACTTGGATATTAATAGTGAATATACTGCTTTTCCTGTTGAGAACAGAGACCTGTTCCA
AGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAACACTTATTCTTTCACGTTTACAAGATC
AATTCAATGACGATGACTTAATTCTAGCTGAATACGGCGCAACAGTTGTCGGAATGGAAATCCTAAGAGAAAAAGCAGAA
GAAATTGAAGAGGAAGCAAGAAGCAAAGCTGTCGTACAAATGGCTATCAGCTCGCTTTCTTACAGTGAGCTTGAAGCAAT
TGAGCACATTTTTGAGGAGCTTGACGGAAACGAAGGTCTTCTTGTTGCAAGTAAAATCGCTGACCGTGTCGGCATTACCC
GTTCTGTTATTGTGAACGCACTCAGAAAGCTGGAGAGCGCCGGTGTTATCGAGTCTAGATCATTAGGAATGAAAGGTACT
TATATCAAGGTGCTAAACAACAAATTCCTAATTGAATTAGAAAATCTAAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NSM6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

100

100

1
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.451

98.456

0.467

Multiple sequence alignment