Detailed information    

insolico Bioinformatically predicted

Overview

Name   proC   Type   Machinery gene
Locus tag   MPG41_RS01680 Genome accession   NZ_CP094109
Coordinates   335115..335888 (-) Length   257 a.a.
NCBI ID   WP_245068061.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe072     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 330115..340888
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG41_RS01650 (MPG41_01650) - 331348..332316 (-) 969 WP_245068057.1 NAD(P)/FAD-dependent oxidoreductase -
  MPG41_RS01655 (MPG41_01655) ccoS 332338..332529 (-) 192 WP_245068058.1 cbb3-type cytochrome oxidase assembly protein CcoS -
  MPG41_RS01660 (MPG41_01660) - 332662..333243 (+) 582 WP_245068059.1 DedA family protein -
  MPG41_RS01665 (MPG41_01665) - 333334..333828 (+) 495 WP_079357464.1 flavodoxin -
  MPG41_RS01670 (MPG41_01670) ybeY 333884..334306 (+) 423 WP_245068060.1 rRNA maturation RNase YbeY -
  MPG41_RS01675 (MPG41_01675) - 334554..335088 (-) 535 Protein_328 Fic/DOC family protein -
  MPG41_RS01680 (MPG41_01680) proC 335115..335888 (-) 774 WP_245068061.1 pyrroline-5-carboxylate reductase Machinery gene
  MPG41_RS01685 (MPG41_01685) hopL 335902..339633 (-) 3732 WP_245068062.1 Hop family outer membrane protein HopL -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28239.97 Da        Isoelectric Point: 8.6076

>NTDB_id=575074 MPG41_RS01680 WP_245068061.1 335115..335888(-) (proC) [Helicobacter pylori strain Hpfe072]
MEILQFIGYGNMAQAILEGSHEILSKRFILEITGRNPEKIAPFLQEKNIQARIIPYKNAIDIHQKFVFLLFKPYNLKDFN
YQGQAKSVLSALAGVGFEALSDAINSSHYLKCMPNIASKFALSSTAVCEKSPMPLISQKALSVIESFGNCVRVDNEELVD
ASVATNGSALAFLSLVASSLKDAGIREGLNARDSLELVKMSFKGFAKLLEKERPEMIIEQICTPKGATIEGLSVLEKKGV
RGAFIKACHESVKKMHL

Nucleotide


Download         Length: 774 bp        

>NTDB_id=575074 MPG41_RS01680 WP_245068061.1 335115..335888(-) (proC) [Helicobacter pylori strain Hpfe072]
ATGGAAATCTTACAATTCATCGGCTATGGGAATATGGCTCAAGCGATTTTAGAAGGCTCTCATGAAATTTTATCCAAGCG
TTTTATTTTAGAGATTACCGGGCGAAACCCCGAAAAAATCGCCCCCTTTTTACAAGAAAAAAACATTCAAGCGCGCATCA
TTCCCTATAAAAACGCTATTGATATACACCAAAAATTCGTGTTTTTACTTTTTAAGCCTTATAACCTTAAAGATTTTAAT
TATCAAGGGCAAGCCAAAAGCGTTTTGAGCGCACTAGCTGGCGTGGGTTTTGAAGCTTTAAGCGATGCGATAAATTCTTC
ACATTATCTCAAATGCATGCCCAATATTGCAAGCAAGTTCGCCCTTTCTTCTACGGCGGTGTGTGAAAAATCACCCATGC
CCTTAATAAGCCAAAAGGCTTTGAGTGTTATTGAGAGTTTTGGGAATTGCGTGCGAGTGGATAATGAAGAGTTGGTGGAT
GCCAGCGTGGCGACAAACGGGAGCGCGCTTGCGTTTTTAAGCTTGGTAGCGAGCAGTTTGAAAGATGCCGGTATTAGGGA
GGGCTTGAACGCTAGAGATTCTTTAGAATTGGTGAAAATGAGTTTTAAAGGCTTTGCCAAGCTGTTAGAAAAAGAACGCC
CCGAGATGATTATAGAGCAAATTTGCACCCCTAAAGGTGCAACGATTGAAGGCTTGAGCGTTTTAGAAAAAAAGGGGGTT
AGGGGAGCGTTTATCAAAGCATGCCATGAAAGCGTGAAAAAAATGCACCTCTAA

Domains

Predicted by InterProScan.

Pyrroline-5-carboxylate reductase dimerisation (P5CR_dimer)

(156-254)

NADP oxidoreductase coenzyme F420-dependent (F420_oxidored)

(4-94)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  proC Campylobacter jejuni subsp. jejuni 81-176

36.614

98.833

0.362