Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   JNUCC22_RS08165 Genome accession   NZ_CP076408
Coordinates   1620143..1620922 (+) Length   259 a.a.
NCBI ID   WP_003154263.1    Uniprot ID   I2C545
Organism   Bacillus sp. JNUCC-22     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1615143..1625922
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JNUCC22_RS08145 (JNUCC22_08145) trmFO 1615830..1617137 (+) 1308 WP_012117550.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  JNUCC22_RS08150 (JNUCC22_08150) xerC 1617207..1618124 (+) 918 WP_007409774.1 tyrosine recombinase XerC -
  JNUCC22_RS08155 (JNUCC22_08155) hslV 1618140..1618685 (+) 546 WP_003154267.1 ATP-dependent protease subunit HslV -
  JNUCC22_RS08160 (JNUCC22_08160) hslU 1618693..1620105 (+) 1413 WP_256052823.1 HslU--HslV peptidase ATPase subunit -
  JNUCC22_RS08165 (JNUCC22_08165) codY 1620143..1620922 (+) 780 WP_003154263.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  JNUCC22_RS08170 (JNUCC22_08170) flgB 1621276..1621665 (+) 390 WP_003154260.1 flagellar basal body rod protein FlgB -
  JNUCC22_RS08175 (JNUCC22_08175) flgC 1621665..1622117 (+) 453 WP_007409776.1 flagellar basal body rod protein FlgC -
  JNUCC22_RS08180 (JNUCC22_08180) fliE 1622128..1622448 (+) 321 WP_007409777.1 flagellar hook-basal body complex protein FliE -
  JNUCC22_RS08185 (JNUCC22_08185) fliF 1622491..1624101 (+) 1611 WP_012117551.1 flagellar basal-body MS-ring/collar protein FliF -
  JNUCC22_RS08190 (JNUCC22_08190) fliG 1624114..1625130 (+) 1017 WP_003154256.1 flagellar motor switch protein FliG -
  JNUCC22_RS08195 (JNUCC22_08195) fliH 1625123..1625878 (+) 756 WP_015239852.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29056.24 Da        Isoelectric Point: 4.6017

>NTDB_id=575051 JNUCC22_RS08165 WP_003154263.1 1620143..1620922(+) (codY) [Bacillus sp. JNUCC-22]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=575051 JNUCC22_RS08165 WP_003154263.1 1620143..1620922(+) (codY) [Bacillus sp. JNUCC-22]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ACCAGCAGATTGAAAATGACCGTATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCGTTTCCTGTGGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTCATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCGGTTGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTTGTGGCAAGTAAGATTGCCGACCGTGTCGGCATTACGC
GTTCAGTAATCGTTAACGCGCTGAGAAAGCTGGAAAGCGCAGGCGTCATTGAATCCAGATCACTGGGAATGAAGGGGACG
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C545

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

99.228

100

0.992
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.843

98.456

0.471