Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB3   Type   Machinery gene
Locus tag   MPG17_RS01775 Genome accession   NZ_CP094107
Coordinates   358278..358538 (+) Length   86 a.a.
NCBI ID   WP_000602756.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe074     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 353278..363538
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG17_RS01760 (MPG17_01760) - 355295..356058 (+) 764 Protein_341 hypothetical protein -
  MPG17_RS01765 (MPG17_01765) - 356069..357985 (+) 1917 WP_245018035.1 toprim domain-containing protein -
  MPG17_RS01770 (MPG17_01770) - 357975..358277 (+) 303 WP_220858539.1 TrbC/VirB2 family protein -
  MPG17_RS01775 (MPG17_01775) comB3 358278..358538 (+) 261 WP_000602756.1 hypothetical protein Machinery gene
  MPG17_RS01780 (MPG17_01780) - 358551..360991 (+) 2441 Protein_345 VirB4 family type IV secretion system protein -
  MPG17_RS01785 (MPG17_01785) - 361035..362969 (+) 1935 WP_245018036.1 type IA DNA topoisomerase -
  MPG17_RS07645 - 362969..363097 (+) 129 WP_268217798.1 hypothetical protein -

Sequence

Protein


Download         Length: 86 a.a.        Molecular weight: 10154.04 Da        Isoelectric Point: 4.6082

>NTDB_id=575035 MPG17_RS01775 WP_000602756.1 358278..358538(+) (comB3) [Helicobacter pylori strain Hpfe074]
MILNYVETINVREISKKEKFLKLNMNSWIISFLSASFLFVWSLLYGVVLLVALITMFYILEFFDEDITNIILANLTLKND
TKEYYA

Nucleotide


Download         Length: 261 bp        

>NTDB_id=575035 MPG17_RS01775 WP_000602756.1 358278..358538(+) (comB3) [Helicobacter pylori strain Hpfe074]
ATGATTTTAAATTATGTAGAGACCATCAATGTTAGAGAAATATCTAAAAAAGAGAAGTTTTTAAAGCTTAATATGAATAG
TTGGATCATTTCTTTTTTGAGCGCTTCTTTCTTATTTGTGTGGTCTTTATTATATGGCGTGGTGCTATTGGTGGCATTAA
TAACAATGTTTTACATACTAGAATTTTTTGATGAAGATATTACAAACATTATTTTGGCAAACCTAACGCTAAAAAATGAC
ACTAAAGAATATTATGCTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB3 Helicobacter pylori 26695

44.828

100

0.453