Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   MPF92_RS05050 Genome accession   NZ_CP094106
Coordinates   1080921..1082096 (+) Length   391 a.a.
NCBI ID   WP_245023564.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe075     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1075921..1087096
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPF92_RS05025 (MPF92_05025) - 1076184..1077080 (+) 897 WP_000697549.1 OriC activity response regulator -
  MPF92_RS05030 (MPF92_05030) - 1077488..1078170 (+) 683 Protein_973 5'-3' exonuclease -
  MPF92_RS05035 (MPF92_05035) - 1078259..1079509 (-) 1251 WP_245023563.1 outer membrane family protein -
  MPF92_RS05040 (MPF92_05040) - 1079677..1080543 (+) 867 WP_000045783.1 DnaJ family protein -
  MPF92_RS05045 (MPF92_05045) - 1080553..1080924 (+) 372 WP_000332994.1 helix-turn-helix transcriptional regulator -
  MPF92_RS05050 (MPF92_05050) rarA 1080921..1082096 (+) 1176 WP_245023564.1 replication-associated recombination protein A Machinery gene
  MPF92_RS05055 (MPF92_05055) fur 1082256..1082708 (+) 453 WP_120918580.1 ferric iron uptake transcriptional regulator -
  MPF92_RS05060 (MPF92_05060) - 1082727..1083224 (-) 498 WP_000780295.1 DUF2147 domain-containing protein -
  MPF92_RS05065 (MPF92_05065) - 1083221..1083757 (-) 537 WP_245023565.1 YhcH/YjgK/YiaL family protein -
  MPF92_RS05070 (MPF92_05070) fliY 1083785..1084648 (-) 864 WP_245023566.1 flagellar motor switch protein FliY -
  MPF92_RS05075 (MPF92_05075) fliM 1084652..1085716 (-) 1065 WP_000763582.1 flagellar motor switch protein FliM -
  MPF92_RS05080 (MPF92_05080) - 1085709..1086485 (-) 777 WP_120918574.1 RNA polymerase sigma factor FliA -
  MPF92_RS05085 (MPF92_05085) - 1086463..1086777 (-) 315 WP_000867999.1 hypothetical protein -

Sequence

Protein


Download         Length: 391 a.a.        Molecular weight: 43769.38 Da        Isoelectric Point: 7.7629

>NTDB_id=575003 MPF92_RS05050 WP_245023564.1 1080921..1082096(+) (rarA) [Helicobacter pylori strain Hpfe075]
MSLTSLLNPKSLEDFLGQEHLIGKDAPLFKALQSKHFPHAFLYGPPGVGKTSLAQIIARMLERPILLFNATDFKLEDLRL
KLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIMEKDHALILGASTQDPNYSLSHAIRSRSFIFELTPLNKSDLDKLCAK
ALTLLKKQIEPSAKTYLLNNSAGDARALLNLLDLSAKIEDPITLETLQSLRPHSPNDGSYSDDTHYNLTSALIKSLRGSD
ENASIYYLARLIAGGENPEFIARRLVVFASEDIGNANPNALNLAASCLFSVKQIGYPEARIILSQCVIYLACSPKSNTAY
RAINQALDCIQKGSLYPIPKHLLPNAKDYLYPHDYNGYVKQDYLEKPLDLVSSQGIGFEKTLLEWLDKIRN

Nucleotide


Download         Length: 1176 bp        

>NTDB_id=575003 MPF92_RS05050 WP_245023564.1 1080921..1082096(+) (rarA) [Helicobacter pylori strain Hpfe075]
ATGAGCCTGACTTCGCTTTTAAACCCAAAAAGCCTAGAAGATTTTTTAGGTCAAGAGCATCTAATAGGGAAAGACGCTCC
CTTATTTAAAGCCCTACAATCCAAACACTTCCCCCATGCCTTTCTCTATGGCCCTCCTGGCGTGGGTAAAACAAGCCTGG
CTCAAATCATCGCCCGCATGCTAGAGCGCCCCATTCTTTTATTCAATGCGACAGATTTCAAATTAGAGGATTTACGCCTT
AAGCTTAAAAATTACCAAAACACCCTTTTAAAACCGGTTGTTTTTATTGATGAAACCCACAGATTGAATAAAACCCAACA
AGAATTTTTACTCCCCATTATGGAAAAAGATCACGCTTTAATCTTAGGGGCTAGCACGCAAGATCCTAATTACAGCCTAA
GCCATGCGATCCGCTCAAGAAGTTTTATTTTTGAATTAACCCCCCTAAACAAGAGCGATTTAGACAAACTTTGCGCTAAA
GCTTTAACATTGCTCAAAAAACAAATAGAGCCTAGCGCTAAAACCTATCTTTTAAACAACAGCGCTGGCGATGCTAGAGC
GTTATTAAACCTTTTAGATTTGAGCGCTAAGATAGAAGATCCTATCACTTTAGAAACGCTGCAATCCTTACGGCCTCATA
GCCCAAATGACGGATCTTATAGCGATGATACGCATTATAATCTTACTAGCGCATTAATCAAGTCTTTAAGAGGGAGCGAT
GAAAACGCTTCCATCTATTATCTGGCACGCTTGATTGCTGGCGGGGAAAACCCGGAATTTATCGCCAGAAGGCTGGTGGT
TTTTGCGAGCGAAGATATTGGTAACGCTAACCCAAACGCCCTAAATTTAGCCGCTTCTTGCTTGTTTTCAGTCAAACAAA
TCGGCTACCCTGAAGCGCGCATCATTTTAAGCCAATGCGTGATTTATCTGGCTTGTTCGCCCAAGTCCAACACGGCTTAT
AGAGCGATCAACCAGGCTTTGGATTGTATTCAAAAAGGCTCACTCTACCCCATTCCTAAACACCTGCTGCCTAACGCTAA
AGACTACCTTTACCCGCATGATTATAACGGCTATGTCAAACAAGATTATTTGGAAAAACCCCTAGATTTGGTTTCTTCTC
AAGGCATAGGGTTTGAAAAAACCCTTTTAGAATGGCTTGATAAGATAAGAAATTGA

Domains

Predicted by InterProScan.

MgsA AAA+ ATPase C terminal (MgsA_C)

(238-389)

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(7-117)

AAA C-terminal domain (AAA_assoc_2)

(168-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

37.621

100

0.396