Detailed information    

insolico Bioinformatically predicted

Overview

Name   proC   Type   Machinery gene
Locus tag   MPF92_RS01750 Genome accession   NZ_CP094106
Coordinates   358115..358888 (-) Length   257 a.a.
NCBI ID   WP_245024029.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe075     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 353115..363888
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPF92_RS01715 (MPF92_01715) - 353191..354351 (+) 1161 WP_245024028.1 HP1165 family MFS efflux transporter -
  MPF92_RS01720 (MPF92_01720) - 354553..355521 (-) 969 WP_096483217.1 NAD(P)/FAD-dependent oxidoreductase -
  MPF92_RS01725 (MPF92_01725) ccoS 355547..355738 (-) 192 WP_001090942.1 cbb3-type cytochrome oxidase assembly protein CcoS -
  MPF92_RS01730 (MPF92_01730) - 355860..356441 (+) 582 WP_021306789.1 DedA family protein -
  MPF92_RS01735 (MPF92_01735) - 356531..357025 (+) 495 WP_180452735.1 flavodoxin -
  MPF92_RS01740 (MPF92_01740) ybeY 357078..357500 (+) 423 WP_180578036.1 rRNA maturation RNase YbeY -
  MPF92_RS01745 (MPF92_01745) - 357558..358091 (-) 534 WP_220957612.1 Fic/DOC family protein -
  MPF92_RS01750 (MPF92_01750) proC 358115..358888 (-) 774 WP_245024029.1 pyrroline-5-carboxylate reductase Machinery gene
  MPF92_RS01755 (MPF92_01755) hopL 358902..362594 (-) 3693 WP_245024030.1 Hop family outer membrane protein HopL -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28124.98 Da        Isoelectric Point: 9.3718

>NTDB_id=574989 MPF92_RS01750 WP_245024029.1 358115..358888(-) (proC) [Helicobacter pylori strain Hpfe075]
MEILQFIGYGNMAQAILEGSHEILSKRFILEITGRNPEKIAPFLQEKNIQACIIPYKDAIDIHQKFVFLLFKPYNLKDFN
YQGQAKSVLSALAGVGFKALSDAINSSHYLKCMPNIASKFALSSTAVCEKSPMPLISQKALSVIESFGNCVRVGNEEQVD
ASVATNGSALAFLSLVASSLKDAGIREGLNAKDSLELVKMSFKGFAKLLEKERPEMIIEQICTPKGATIEGLSVLEKKGV
RGAFIKACQKSVKKMRL

Nucleotide


Download         Length: 774 bp        

>NTDB_id=574989 MPF92_RS01750 WP_245024029.1 358115..358888(-) (proC) [Helicobacter pylori strain Hpfe075]
ATGGAAATCTTACAATTCATCGGCTATGGGAATATGGCTCAAGCGATTTTAGAAGGCTCTCATGAAATTTTATCCAAGCG
TTTTATTTTAGAGATTACCGGGCGAAACCCTGAAAAAATCGCCCCCTTTTTACAAGAAAAAAACATTCAAGCGTGCATCA
TTCCCTATAAAGACGCTATTGATATACACCAAAAATTCGTGTTTTTACTTTTTAAGCCTTATAACCTTAAGGATTTTAAT
TATCAAGGGCAAGCTAAAAGCGTTTTGAGCGCGCTAGCTGGCGTGGGTTTTAAAGCTTTAAGCGATGCGATAAATTCTTC
ACATTATCTCAAATGCATGCCCAATATTGCGAGCAAGTTCGCCCTTTCTTCTACGGCGGTGTGCGAAAAATCGCCCATGC
CCTTAATAAGCCAAAAGGCTTTGAGTGTTATTGAGAGTTTTGGGAATTGCGTGCGAGTGGGCAATGAAGAGCAGGTGGAT
GCCAGCGTGGCGACAAACGGGAGCGCACTTGCGTTTTTAAGCTTGGTAGCGAGCAGTTTGAAAGATGCCGGTATTAGGGA
GGGCTTGAACGCTAAAGACTCTTTAGAATTGGTGAAAATGAGTTTTAAAGGCTTTGCCAAGCTTTTAGAAAAAGAACGCC
CCGAGATGATTATAGAGCAAATTTGCACCCCTAAAGGCGCAACGATTGAAGGCTTGAGCGTTTTAGAAAAAAAGGGGGTT
AGGGGAGCGTTTATCAAAGCATGCCAAAAGAGCGTAAAAAAAATGCGCCTCTAA

Domains

Predicted by InterProScan.

Pyrroline-5-carboxylate reductase dimerisation (P5CR_dimer)

(156-255)

NADP oxidoreductase coenzyme F420-dependent (F420_oxidored)

(4-94)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  proC Campylobacter jejuni subsp. jejuni 81-176

36.614

98.833

0.362