Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   CTB89_RS06545 Genome accession   NZ_AP017891
Coordinates   1319453..1320226 (+) Length   257 a.a.
NCBI ID   WP_000055337.1    Uniprot ID   P63843
Organism   Staphylococcus aureus strain GN3     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1314453..1325226
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CTB89_RS06525 trmFO 1314797..1316104 (+) 1308 WP_000195254.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -
  CTB89_RS06530 xerC 1316521..1317417 (+) 897 WP_001015613.1 tyrosine recombinase XerC -
  CTB89_RS06535 hslV 1317414..1317959 (+) 546 WP_000072681.1 ATP-dependent protease subunit HslV -
  CTB89_RS06540 hslU 1318025..1319428 (+) 1404 WP_000379054.1 ATP-dependent protease ATPase subunit HslU -
  CTB89_RS06545 codY 1319453..1320226 (+) 774 WP_000055337.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  CTB89_RS06550 - 1320277..1320369 (+) 93 WP_031788481.1 hypothetical protein -
  CTB89_RS06555 rpsB 1320568..1321335 (+) 768 WP_000268484.1 30S ribosomal protein S2 -
  CTB89_RS06560 - 1321369..1321482 (+) 114 WP_001789890.1 hypothetical protein -
  CTB89_RS06565 tsf 1321517..1322398 (+) 882 WP_000201387.1 translation elongation factor Ts -
  CTB89_RS06570 pyrH 1322535..1323257 (+) 723 WP_000057330.1 UMP kinase -
  CTB89_RS06575 frr 1323276..1323830 (+) 555 WP_001280006.1 ribosome recycling factor -
  CTB89_RS06580 - 1324203..1324973 (+) 771 WP_000473705.1 isoprenyl transferase -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28755.13 Da        Isoelectric Point: 6.0680

>NTDB_id=57498 CTB89_RS06545 WP_000055337.1 1319453..1320226(+) (codY) [Staphylococcus aureus strain GN3]
MSLLSKTRELNTLLQKHKGIAVDFKDVAQTISSVTVTNVFIVSRRGKILGSSLNELLKSQRIIQMLEERHIPSEYTERLM
EVKQTESNIDIDNVLTVFPPENRELFIDSRTTIFPILGGGERLGTLVLGRVHDDFNENDLVLGEYAATVIGMEILREKHS
EVEKEARDKAAITMAINSLSYSEKEAIEHIFEELGGTEGLLIASKVADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
FIKVKKEKFLDELEKSK

Nucleotide


Download         Length: 774 bp        

>NTDB_id=57498 CTB89_RS06545 WP_000055337.1 1319453..1320226(+) (codY) [Staphylococcus aureus strain GN3]
ATGAGCTTATTATCTAAAACGAGAGAGTTAAACACGTTACTTCAAAAACACAAAGGTATTGCGGTTGATTTTAAAGATGT
AGCACAAACGATTAGTAGCGTAACTGTAACAAATGTATTTATTGTATCGCGTCGAGGTAAAATTTTAGGGTCGAGTCTAA
ATGAATTATTAAAAAGTCAAAGAATTATTCAAATGTTGGAAGAAAGACATATTCCAAGTGAATATACAGAACGATTAATG
GAAGTTAAACAAACAGAATCAAATATTGATATCGACAATGTATTAACAGTTTTCCCACCTGAAAACAGAGAATTATTCAT
AGATAGTCGTACAACTATCTTCCCAATTTTAGGTGGAGGAGAAAGATTAGGTACATTAGTACTTGGTCGAGTACATGATG
ATTTTAATGAAAATGATTTGGTACTAGGTGAATATGCTGCTACAGTTATTGGTATGGAAATCTTACGTGAGAAGCATAGT
GAAGTAGAAAAAGAAGCGCGCGATAAAGCTGCTATTACAATGGCAATTAATTCATTATCTTATTCTGAAAAAGAAGCAAT
TGAACATATCTTTGAAGAACTTGGCGGTACAGAAGGCCTATTAATCGCATCAAAAGTTGCAGATAGAGTTGGTATTACTA
GATCTGTAATTGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTAATTGAATCACGTTCTTTAGGAATGAAAGGTACT
TTCATTAAAGTTAAAAAAGAAAAATTCTTAGATGAATTAGAAAAAAGTAAGTAA

Domains

Predicted by InterProScan.

CodY GAF-like domain (CodY)

(2-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P63843

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

64.202

100

0.642
  codY Lactococcus lactis subsp. lactis strain DGCC12653

42.802

100

0.428

Multiple sequence alignment