Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB3   Type   Machinery gene
Locus tag   MPF96_RS07900 Genome accession   NZ_CP094101
Coordinates   1414896..1415156 (+) Length   86 a.a.
NCBI ID   WP_342369010.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe079     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1409896..1420156
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPF96_RS06795 (MPF96_06795) - 1411335..1411685 (-) 351 WP_245048845.1 hypothetical protein -
  MPF96_RS06800 (MPF96_06800) - 1411687..1411857 (-) 171 Protein_1321 SMI1/KNR4 family protein -
  MPF96_RS06805 (MPF96_06805) - 1411913..1412676 (+) 764 Protein_1322 hypothetical protein -
  MPF96_RS06810 (MPF96_06810) - 1412687..1414603 (+) 1917 WP_245048847.1 toprim domain-containing protein -
  MPF96_RS06815 (MPF96_06815) - 1414593..1414892 (+) 300 Protein_1324 TrbC/VirB2 family protein -
  MPF96_RS07900 comB3 1414896..1415156 (+) 261 WP_342369010.1 virB3 type IV secretion protein Machinery gene
  MPF96_RS06820 (MPF96_06820) - 1415169..1417665 (+) 2497 Protein_1326 VirB4 family type IV secretion system protein -
  MPF96_RS06825 (MPF96_06825) - 1417658..1419592 (+) 1935 WP_245049899.1 type IA DNA topoisomerase -
  MPF96_RS07825 - 1419592..1419720 (+) 129 WP_001185489.1 hypothetical protein -

Sequence

Protein


Download         Length: 86 a.a.        Molecular weight: 10153.09 Da        Isoelectric Point: 6.2353

>NTDB_id=574899 MPF96_RS07900 WP_342369010.1 1414896..1415156(+) (comB3) [Helicobacter pylori strain Hpfe079]
MILNYVETINVREISKKEKFLKLNMNSWIISFLSASFLFVWSLLYGVVLLVALITMFYILEFFDKDITNIILANLTLKND
TKEYYA

Nucleotide


Download         Length: 261 bp        

>NTDB_id=574899 MPF96_RS07900 WP_342369010.1 1414896..1415156(+) (comB3) [Helicobacter pylori strain Hpfe079]
ATGATTTTAAATTATGTAGAGACCATCAATGTTAGAGAAATATCTAAAAAAGAGAAGTTTTTAAAGCTTAATATGAATAG
TTGGATCATTTCTTTTTTGAGCGCTTCTTTCTTATTTGTGTGGTCTTTATTATATGGCGTGGTGCTATTGGTGGCATTAA
TAACAATGTTTTACATACTAGAATTTTTTGATAAAGATATTACAAACATTATTTTGGCAAACCTAACGCTAAAAAATGAC
ACTAAAGAATATTATGCTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB3 Helicobacter pylori 26695

43.678

100

0.442