Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   MPF96_RS04970 Genome accession   NZ_CP094101
Coordinates   1043902..1045077 (+) Length   391 a.a.
NCBI ID   WP_245048463.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe079     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1038902..1050077
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPF96_RS04945 (MPF96_04945) - 1039191..1040087 (+) 897 WP_245048461.1 response regulator -
  MPF96_RS04950 (MPF96_04950) - 1040495..1041177 (+) 683 Protein_959 5'-3' exonuclease -
  MPF96_RS04955 (MPF96_04955) - 1041240..1042490 (-) 1251 WP_245048462.1 outer membrane family protein -
  MPF96_RS04960 (MPF96_04960) - 1042658..1043524 (+) 867 WP_128480032.1 DnaJ C-terminal domain-containing protein -
  MPF96_RS04965 (MPF96_04965) - 1043534..1043905 (+) 372 WP_000332994.1 helix-turn-helix transcriptional regulator -
  MPF96_RS04970 (MPF96_04970) rarA 1043902..1045077 (+) 1176 WP_245048463.1 replication-associated recombination protein A Machinery gene
  MPF96_RS04975 (MPF96_04975) fur 1045233..1045685 (+) 453 WP_000824992.1 ferric iron uptake transcriptional regulator -
  MPF96_RS04980 (MPF96_04980) - 1045705..1046202 (-) 498 WP_245048464.1 DUF2147 domain-containing protein -
  MPF96_RS04985 (MPF96_04985) - 1046199..1046735 (-) 537 WP_245048465.1 YhcH/YjgK/YiaL family protein -
  MPF96_RS04990 (MPF96_04990) fliY 1046763..1047626 (-) 864 WP_245048466.1 flagellar motor switch protein FliY -
  MPF96_RS04995 (MPF96_04995) fliM 1047630..1048694 (-) 1065 WP_000763605.1 flagellar motor switch protein FliM -
  MPF96_RS05000 (MPF96_05000) - 1048687..1049463 (-) 777 WP_000602378.1 RNA polymerase sigma factor FliA -
  MPF96_RS05005 (MPF96_05005) - 1049441..1049755 (-) 315 WP_245048467.1 hypothetical protein -

Sequence

Protein


Download         Length: 391 a.a.        Molecular weight: 43895.47 Da        Isoelectric Point: 8.1225

>NTDB_id=574881 MPF96_RS04970 WP_245048463.1 1043902..1045077(+) (rarA) [Helicobacter pylori strain Hpfe079]
MSLTSLLNPKSLEDFLGQEHLIGKDAPLFKALQSKHFPHTFFYGPPGVGKTSLAQIIARMLERPILLFNATDFKLEDLRI
KLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIMEKDHALILGASTQDPNYSLSHAIRSRSFIFELTPLNKSDLDKLCAK
ALTLLKKQIEPSAKTYLLNSSAGDARALLNLLDLSAKIENPITLETLQSLRPHSPNDGSYSDDTHYNLTSALIKSLRGSD
ENASIYYLARLIAGGENPEFIARRLVVFASEDIGNANPNALNLATSCLFSVKQIGYPEARIILSQCVIYLACSPKSNTAY
RAINQALDYIQKGSLYPIPKHLLPNAKDYLYPHDYNGYVKQDYLEKPLDLVSSQGIGFEKTLLEWLDKIRN

Nucleotide


Download         Length: 1176 bp        

>NTDB_id=574881 MPF96_RS04970 WP_245048463.1 1043902..1045077(+) (rarA) [Helicobacter pylori strain Hpfe079]
ATGAGCCTGACTTCGCTTTTAAACCCAAAAAGCTTAGAAGATTTTTTAGGCCAAGAGCATCTAATAGGCAAAGACGCCCC
CTTATTTAAAGCCCTACAATCCAAACACTTCCCCCATACCTTTTTCTATGGCCCTCCTGGCGTGGGTAAAACAAGCCTGG
CTCAAATCATCGCCCGCATGCTAGAGCGCCCCATTCTTTTATTCAATGCGACGGATTTCAAATTAGAGGATTTACGCATT
AAACTTAAAAATTACCAAAACACCCTTTTAAAACCCGTTGTTTTTATTGATGAAACCCACAGATTGAATAAAACCCAACA
AGAATTTTTACTCCCCATTATGGAAAAAGATCACGCTTTAATCTTAGGGGCTAGCACGCAAGATCCTAATTACAGCTTAA
GCCATGCGATCCGCTCAAGAAGTTTTATTTTTGAATTAACCCCCCTAAACAAGAGCGATTTAGACAAACTTTGCGCTAAA
GCTTTAACATTACTCAAAAAACAAATAGAGCCTAGCGCTAAAACCTATCTTTTAAACAGCAGCGCTGGCGATGCTAGAGC
GTTATTAAACCTTTTAGATTTGAGCGCTAAAATAGAAAATCCTATCACTTTAGAAACGCTGCAATCCTTACGGCCTCATA
GCCCAAATGACGGATCTTATAGCGATGATACGCATTATAATCTTACTAGTGCATTAATCAAGTCTTTAAGAGGGAGCGAT
GAAAACGCTTCCATCTATTATCTAGCACGCTTGATTGCTGGCGGGGAAAACCCGGAATTTATCGCCAGAAGGCTGGTGGT
TTTTGCGAGCGAAGATATTGGTAACGCTAACCCAAACGCCCTAAATTTAGCCACTTCTTGCTTGTTTTCAGTCAAACAAA
TCGGCTACCCTGAAGCGCGCATCATTTTAAGCCAATGCGTGATTTATCTGGCTTGCTCGCCCAAGTCTAACACGGCCTAT
AGAGCGATCAATCAGGCTTTGGATTATATTCAAAAAGGCTCACTCTACCCCATTCCTAAACACCTGCTGCCTAACGCTAA
AGACTACCTTTACCCGCATGATTATAACGGCTATGTCAAACAAGATTATTTGGAAAAACCCCTAGATTTGGTTTCTTCTC
AAGGCATAGGGTTTGAAAAAACCCTTTTAGAATGGCTTGATAAGATAAGAAATTGA

Domains

Predicted by InterProScan.

MgsA AAA+ ATPase C terminal (MgsA_C)

(238-389)

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(7-117)

AAA C-terminal domain (AAA_assoc_2)

(168-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

37.621

100

0.396