Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB3   Type   Machinery gene
Locus tag   MPG69_RS05375 Genome accession   NZ_CP094096
Coordinates   1132728..1132988 (+) Length   86 a.a.
NCBI ID   WP_000602756.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe082     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1127728..1137988
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG69_RS05350 (MPG69_05350) - 1128139..1128924 (-) 786 WP_245055289.1 hypothetical protein -
  MPG69_RS05355 (MPG69_05355) - 1128924..1129305 (-) 382 Protein_1046 DUF1294 domain-containing protein -
  MPG69_RS05360 (MPG69_05360) - 1129744..1130508 (+) 765 WP_245055291.1 hypothetical protein -
  MPG69_RS05365 (MPG69_05365) - 1130519..1132435 (+) 1917 WP_245055293.1 toprim domain-containing protein -
  MPG69_RS05370 (MPG69_05370) - 1132425..1132727 (+) 303 WP_245055295.1 TrbC/VirB2 family protein -
  MPG69_RS05375 (MPG69_05375) comB3 1132728..1132988 (+) 261 WP_000602756.1 hypothetical protein Machinery gene
  MPG69_RS05380 (MPG69_05380) - 1133001..1135043 (+) 2043 WP_245055297.1 type IV secretion system DNA-binding domain-containing protein -
  MPG69_RS05385 (MPG69_05385) - 1135036..1136970 (+) 1935 WP_245056774.1 type IA DNA topoisomerase -

Sequence

Protein


Download         Length: 86 a.a.        Molecular weight: 10154.04 Da        Isoelectric Point: 4.6082

>NTDB_id=574765 MPG69_RS05375 WP_000602756.1 1132728..1132988(+) (comB3) [Helicobacter pylori strain Hpfe082]
MILNYVETINVREISKKEKFLKLNMNSWIISFLSASFLFVWSLLYGVVLLVALITMFYILEFFDEDITNIILANLTLKND
TKEYYA

Nucleotide


Download         Length: 261 bp        

>NTDB_id=574765 MPG69_RS05375 WP_000602756.1 1132728..1132988(+) (comB3) [Helicobacter pylori strain Hpfe082]
ATGATTTTAAATTATGTAGAGACTATCAATGTTAGAGAAATATCTAAAAAAGAGAAGTTTTTAAAGCTTAATATGAATAG
TTGGATCATTTCTTTTTTGAGCGCTTCTTTCTTATTTGTGTGGTCTTTATTATATGGCGTGGTGCTATTGGTGGCATTAA
TAACAATGTTTTACATACTAGAATTTTTTGATGAAGATATTACAAACATTATTTTGGCAAACCTAACGCTAAAAAATGAC
ACTAAAGAATATTATGCTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB3 Helicobacter pylori 26695

44.828

100

0.453