Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   MPG47_RS04995 Genome accession   NZ_CP094095
Coordinates   1055121..1056296 (+) Length   391 a.a.
NCBI ID   WP_245015880.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe083     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1050121..1061296
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG47_RS04970 (MPG47_04970) - 1050449..1051345 (+) 897 WP_219038377.1 OriC activity response regulator -
  MPG47_RS04975 (MPG47_04975) - 1051571..1052437 (+) 867 WP_245016585.1 5'-3' exonuclease -
  MPG47_RS04980 (MPG47_04980) - 1052459..1053709 (-) 1251 WP_245015879.1 outer membrane family protein -
  MPG47_RS04985 (MPG47_04985) - 1053877..1054743 (+) 867 WP_121025156.1 DnaJ C-terminal domain-containing protein -
  MPG47_RS04990 (MPG47_04990) - 1054753..1055124 (+) 372 WP_000333004.1 helix-turn-helix transcriptional regulator -
  MPG47_RS04995 (MPG47_04995) rarA 1055121..1056296 (+) 1176 WP_245015880.1 replication-associated recombination protein A Machinery gene
  MPG47_RS05000 (MPG47_05000) fur 1056456..1056908 (+) 453 WP_000824985.1 ferric iron uptake transcriptional regulator -
  MPG47_RS05005 (MPG47_05005) - 1056928..1057425 (-) 498 WP_129074739.1 DUF2147 domain-containing protein -
  MPG47_RS05010 (MPG47_05010) - 1057422..1057958 (-) 537 WP_129066015.1 YhcH/YjgK/YiaL family protein -
  MPG47_RS05015 (MPG47_05015) fliY 1057986..1058849 (-) 864 WP_245015881.1 flagellar motor switch protein FliY -
  MPG47_RS05020 (MPG47_05020) fliM 1058853..1059917 (-) 1065 WP_000763605.1 flagellar motor switch protein FliM -
  MPG47_RS05025 (MPG47_05025) - 1059910..1060686 (-) 777 WP_154403733.1 RNA polymerase sigma factor FliA -
  MPG47_RS05030 (MPG47_05030) - 1060664..1060978 (-) 315 WP_000868000.1 hypothetical protein -

Sequence

Protein


Download         Length: 391 a.a.        Molecular weight: 43969.55 Da        Isoelectric Point: 7.8110

>NTDB_id=574723 MPG47_RS04995 WP_245015880.1 1055121..1056296(+) (rarA) [Helicobacter pylori strain Hpfe083]
MSLTSLLNPKSLEDFLGQEHLIGKDAPLFKALQSKHFPHTFFYGPPGVGKTSLAQIIARMLERPILLFNATDFKLEDLRL
KLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIMEKDHALILGASTQDPNYSLSHAIRSRSFIFELTPLNKSDLDKLCAK
ALTLLKKQIEPSAKTYLLNNSAGDARALLNLLDLSAKIEDPITLETLQSLRPHSLNDGSYSDDTHYNLTSALIKSLRGSD
ENASIYYLARLIAGGENPEFIARRLVIFASEDIGNANPNALNLASSCLFSVKQIGYPEARIILSQCVIYLACSPKSNTAY
RAINQALDYIQKGSLYPIPKHLLPNTKDYLYPHDYNGYVKQDYLEKPLDLVSSQGIGFEKTLLEWLDKIRN

Nucleotide


Download         Length: 1176 bp        

>NTDB_id=574723 MPG47_RS04995 WP_245015880.1 1055121..1056296(+) (rarA) [Helicobacter pylori strain Hpfe083]
ATGAGCCTGACTTCGCTTTTAAACCCAAAAAGCCTAGAAGATTTTTTAGGCCAAGAGCATCTAATAGGCAAAGACGCCCC
CTTATTTAAAGCCCTACAATCCAAACACTTCCCCCATACCTTTTTCTATGGCCCTCCTGGCGTGGGTAAAACAAGCCTGG
CTCAAATCATCGCTCGCATGCTAGAGCGTCCCATTCTTTTATTTAATGCGACGGATTTCAAATTAGAGGATTTACGCCTT
AAGCTTAAAAATTACCAAAACACCCTTTTAAAACCGGTTGTTTTTATTGATGAAACCCATAGATTGAATAAAACCCAACA
AGAATTTTTACTCCCCATTATGGAAAAAGATCACGCTTTAATCTTAGGGGCTAGCACGCAAGATCCTAATTACAGCTTAA
GCCATGCGATCCGCTCAAGAAGTTTTATTTTTGAATTAACCCCCCTAAACAAGAGCGATTTAGACAAGCTTTGCGCTAAA
GCTTTAACATTGCTCAAAAAACAAATAGAGCCTAGCGCTAAAACCTATCTTTTAAACAACAGCGCTGGCGATGCTAGAGC
GTTATTAAACCTTTTAGATTTGAGCGCTAAAATAGAAGATCCTATCACTTTAGAAACGCTGCAATCCTTACGGCCTCATA
GCCTAAATGACGGATCTTATAGCGATGATACGCATTATAATCTTACTAGCGCTTTAATCAAGTCTTTAAGAGGGAGCGAT
GAAAACGCTTCCATCTATTATCTGGCGCGCTTGATTGCTGGCGGGGAAAACCCGGAATTTATCGCCAGAAGGCTGGTGAT
TTTTGCGAGCGAAGATATTGGTAACGCTAACCCAAACGCCCTAAATTTAGCCTCTTCTTGCTTGTTTTCAGTCAAACAAA
TCGGCTACCCTGAAGCGCGCATCATTTTAAGCCAATGCGTGATTTATCTGGCTTGTTCGCCCAAGTCTAACACGGCTTAT
AGAGCGATCAACCAGGCTTTGGATTATATTCAAAAAGGCTCACTCTACCCCATTCCTAAACACCTGCTGCCTAACACTAA
AGACTACCTTTACCCGCATGATTATAACGGCTATGTCAAACAAGATTATTTGGAAAAACCCCTAGATTTGGTTTCTTCTC
AAGGCATAGGGTTTGAAAAAACCCTTTTAGAATGGCTTGATAAGATAAGAAATTGA

Domains

Predicted by InterProScan.

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(7-117)

AAA C-terminal domain (AAA_assoc_2)

(168-237)

MgsA AAA+ ATPase C terminal (MgsA_C)

(238-389)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

37.136

100

0.391