Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB3   Type   Machinery gene
Locus tag   MPG19_RS00185 Genome accession   NZ_CP094094
Coordinates   43196..43456 (+) Length   86 a.a.
NCBI ID   WP_050851454.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe084     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 38196..48456
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG19_RS00160 (MPG19_00160) - 38414..40038 (-) 1625 Protein_30 AlwI family type II restriction endonuclease -
  MPG19_RS00165 (MPG19_00165) - 40045..40158 (-) 114 Protein_31 DNA adenine methylase -
  MPG19_RS00170 (MPG19_00170) - 40214..40976 (+) 763 Protein_32 hypothetical protein -
  MPG19_RS00175 (MPG19_00175) - 40987..42903 (+) 1917 WP_245066202.1 toprim domain-containing protein -
  MPG19_RS00180 (MPG19_00180) - 42893..43195 (+) 303 WP_231212359.1 TrbC/VirB2 family protein -
  MPG19_RS00185 (MPG19_00185) comB3 43196..43456 (+) 261 WP_050851454.1 hypothetical protein Machinery gene
  MPG19_RS00190 (MPG19_00190) - 43469..45967 (+) 2499 WP_245066204.1 VirB4 family type IV secretion system protein -
  MPG19_RS00195 (MPG19_00195) - 45960..47894 (+) 1935 WP_245067117.1 type IA DNA topoisomerase -

Sequence

Protein


Download         Length: 86 a.a.        Molecular weight: 10127.01 Da        Isoelectric Point: 4.6082

>NTDB_id=574657 MPG19_RS00185 WP_050851454.1 43196..43456(+) (comB3) [Helicobacter pylori strain Hpfe084]
MILNYVETINVREISKKEKFLKLNMNSWIISFLSASFLFVWSLLYGVVLLVALITMFYILEFFDEDITSIILANLTLKND
TKEYYA

Nucleotide


Download         Length: 261 bp        

>NTDB_id=574657 MPG19_RS00185 WP_050851454.1 43196..43456(+) (comB3) [Helicobacter pylori strain Hpfe084]
ATGATTTTAAATTATGTAGAGACCATCAATGTTAGAGAAATATCTAAAAAAGAGAAGTTTTTAAAGCTTAATATGAATAG
TTGGATCATTTCTTTTTTGAGCGCTTCTTTCTTATTTGTGTGGTCTTTATTATATGGCGTGGTGCTATTGGTGGCATTAA
TAACAATGTTTTACATACTAGAATTTTTTGATGAAGATATTACAAGCATTATTTTGGCAAACCTAACGCTAAAAAATGAC
ACTAAAGAATATTATGCTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB3 Helicobacter pylori 26695

44.828

100

0.453