Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB3   Type   Machinery gene
Locus tag   MPG82_RS06720 Genome accession   NZ_CP094092
Coordinates   1397134..1397400 (-) Length   88 a.a.
NCBI ID   WP_245082177.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe086     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1392134..1402400
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG82_RS06700 (MPG82_06700) - 1392934..1393122 (+) 189 Protein_1307 DUF1104 domain-containing protein -
  MPG82_RS06705 (MPG82_06705) - 1393085..1394716 (-) 1632 WP_245082170.1 type IA DNA topoisomerase -
  MPG82_RS06715 (MPG82_06715) - 1394719..1397087 (-) 2369 Protein_1309 VirB4 family type IV secretion/conjugal transfer ATPase -
  MPG82_RS06720 (MPG82_06720) comB3 1397134..1397400 (-) 267 WP_245082177.1 virB3 type IV secretion protein Machinery gene
  MPG82_RS06725 (MPG82_06725) - 1397401..1397702 (-) 302 Protein_1311 virB2 type IV secretion protein -
  MPG82_RS07705 - 1397699..1399221 (-) 1523 Protein_1312 hypothetical protein -
  MPG82_RS06740 (MPG82_06740) - 1399228..1399521 (-) 294 WP_245082186.1 hypothetical protein -
  MPG82_RS06745 (MPG82_06745) - 1399541..1400320 (-) 780 WP_245082191.1 hypothetical protein -

Sequence

Protein


Download         Length: 88 a.a.        Molecular weight: 10119.95 Da        Isoelectric Point: 4.5319

>NTDB_id=574612 MPG82_RS06720 WP_245082177.1 1397134..1397400(-) (comB3) [Helicobacter pylori strain Hpfe086]
MALHIVCVESINIREISKRETFLGLNLDSWIVSFLISAWLLSFQPLYAMGLMASCVFVFYILEFFDEDITAILHALFTLM
TGARNYYA

Nucleotide


Download         Length: 267 bp        

>NTDB_id=574612 MPG82_RS06720 WP_245082177.1 1397134..1397400(-) (comB3) [Helicobacter pylori strain Hpfe086]
ATGGCATTGCATATTGTTTGTGTTGAAAGTATCAACATTAGAGAAATCAGCAAAAGAGAAACTTTTTTGGGATTAAACTT
GGATAGTTGGATTGTTAGTTTCTTAATATCGGCATGGTTACTTTCATTCCAACCACTTTATGCTATGGGTTTAATGGCTA
GTTGTGTGTTTGTATTCTACATTTTAGAATTTTTTGATGAAGATATAACAGCCATTTTGCATGCGCTTTTCACATTAATG
ACAGGAGCTAGAAATTATTATGCTTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB3 Helicobacter pylori 26695

42.169

94.318

0.398