Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   MPG82_RS04975 Genome accession   NZ_CP094092
Coordinates   1042598..1043773 (+) Length   391 a.a.
NCBI ID   WP_245081696.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe086     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1037598..1048773
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG82_RS04950 (MPG82_04950) - 1037884..1038780 (+) 897 WP_245081691.1 response regulator -
  MPG82_RS04955 (MPG82_04955) - 1039006..1039872 (+) 867 WP_080017795.1 5'-3' exonuclease -
  MPG82_RS04960 (MPG82_04960) - 1039936..1041186 (-) 1251 WP_245081693.1 outer membrane family protein -
  MPG82_RS04965 (MPG82_04965) - 1041354..1042220 (+) 867 WP_180603232.1 DnaJ C-terminal domain-containing protein -
  MPG82_RS04970 (MPG82_04970) - 1042230..1042601 (+) 372 WP_000332994.1 helix-turn-helix transcriptional regulator -
  MPG82_RS04975 (MPG82_04975) rarA 1042598..1043773 (+) 1176 WP_245081696.1 replication-associated recombination protein A Machinery gene
  MPG82_RS04980 (MPG82_04980) fur 1043936..1044388 (+) 453 WP_000824992.1 ferric iron uptake transcriptional regulator -
  MPG82_RS04985 (MPG82_04985) - 1044395..1044904 (-) 510 WP_245081698.1 DUF2147 domain-containing protein -
  MPG82_RS04990 (MPG82_04990) - 1044901..1045437 (-) 537 WP_245081700.1 YhcH/YjgK/YiaL family protein -
  MPG82_RS04995 (MPG82_04995) fliY 1045465..1046328 (-) 864 WP_245081702.1 flagellar motor switch protein FliY -
  MPG82_RS05000 (MPG82_05000) fliM 1046332..1047396 (-) 1065 WP_024421782.1 flagellar motor switch protein FliM -
  MPG82_RS05005 (MPG82_05005) - 1047389..1048165 (-) 777 WP_000602378.1 RNA polymerase sigma factor FliA -
  MPG82_RS05010 (MPG82_05010) - 1048143..1048457 (-) 315 WP_000867999.1 hypothetical protein -

Sequence

Protein


Download         Length: 391 a.a.        Molecular weight: 43950.64 Da        Isoelectric Point: 8.3996

>NTDB_id=574600 MPG82_RS04975 WP_245081696.1 1042598..1043773(+) (rarA) [Helicobacter pylori strain Hpfe086]
MSLTSLLNPKSLEDFLGQEHLIGKDAPLFKALQSKHFPHAFFYGPPGVGKTSLAQIIARMLERPILLFNATDFKLEDLRL
KLKNYQNTLLKPIVFIDETHRLNKTQQEFLLPIMEKDHALILGASTQDPNYSLSHAIRSRSFIFELTPLKKSDLDKLCAK
ALTLLKKQIEPSAKTYLLNNSTGDARALLNLLDLSAKIENPITLETLQSLRPHSLNDGSYSDDTHYNLTSALIKSLRGSD
ENASIYYLARLIAGGENPEFIARRLVIFASEDIGNANPNALNLAASCLFSVKQIGYPEARIILSQCVIYLACSPKSNTAY
RAINQALDYIQKGSLYPIPKHLLPNAKDYLYPHDYNGYVKQDYLEKPLDLVSSQGIGFEKTLLEWLDKIRN

Nucleotide


Download         Length: 1176 bp        

>NTDB_id=574600 MPG82_RS04975 WP_245081696.1 1042598..1043773(+) (rarA) [Helicobacter pylori strain Hpfe086]
ATGAGCCTGACTTCGCTTTTAAACCCAAAAAGCCTAGAAGATTTTTTAGGCCAAGAGCATCTAATAGGCAAAGACGCCCC
CTTATTTAAAGCCCTACAATCCAAACACTTCCCCCACGCCTTTTTCTATGGCCCTCCTGGCGTGGGTAAAACAAGCCTGG
CTCAAATCATCGCCCGCATGCTAGAGCGCCCCATTCTTTTATTCAATGCGACAGATTTCAAATTAGAGGATTTACGCCTT
AAACTTAAAAATTACCAAAACACCCTTTTAAAACCCATTGTTTTTATTGATGAAACCCACAGATTGAATAAAACCCAACA
AGAATTTTTACTCCCCATTATGGAAAAAGATCACGCTTTAATCTTAGGGGCTAGCACGCAAGATCCTAATTACAGTCTAA
GCCATGCGATCCGCTCAAGAAGTTTTATCTTTGAATTAACCCCCCTAAAAAAGAGCGATTTAGACAAGCTTTGCGCTAAA
GCTTTAACATTACTCAAAAAACAAATAGAGCCTAGCGCTAAAACCTATCTTTTAAACAACAGCACTGGCGATGCTAGAGC
GTTATTAAACCTTTTAGATTTGAGCGCTAAAATAGAAAATCCTATCACTTTAGAAACGCTGCAATCCCTACGGCCTCATA
GCCTGAATGACGGATCTTATAGCGATGATACGCATTATAATCTTACTAGCGCTCTAATCAAGTCTTTAAGAGGGAGCGAT
GAAAACGCTTCCATCTATTATCTGGCACGCTTGATTGCTGGCGGGGAAAACCCAGAATTTATCGCCAGAAGGTTGGTGAT
TTTTGCGAGCGAAGATATTGGTAACGCTAACCCAAACGCCCTTAATTTAGCCGCTTCTTGCTTGTTTTCAGTCAAACAAA
TCGGCTACCCTGAAGCGCGTATCATTTTAAGCCAATGCGTGATTTATCTGGCTTGTTCGCCCAAGTCTAACACGGCTTAT
AGAGCGATCAACCAGGCTTTGGATTATATTCAAAAAGGCTCACTCTACCCCATTCCTAAACACCTGCTGCCTAACGCTAA
AGACTACCTTTATCCGCATGATTATAACGGCTATGTCAAACAAGATTATTTGGAAAAACCCCTAGATTTGGTTTCTTCTC
AAGGCATAGGGTTTGAAAAAACCCTTTTAGAATGGCTTGATAAGATAAGAAATTGA

Domains

Predicted by InterProScan.

AAA C-terminal domain (AAA_assoc_2)

(168-237)

MgsA AAA+ ATPase C terminal (MgsA_C)

(238-389)

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(7-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

37.379

100

0.394