Detailed information    

insolico Bioinformatically predicted

Overview

Name   proC   Type   Machinery gene
Locus tag   MPF86_RS01690 Genome accession   NZ_CP094091
Coordinates   333434..334207 (-) Length   257 a.a.
NCBI ID   WP_245064744.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe088     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 328434..339207
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPF86_RS01655 (MPF86_01655) - 328683..329843 (+) 1161 WP_245064723.1 HP1165 family MFS efflux transporter -
  MPF86_RS01660 (MPF86_01660) - 329850..330824 (-) 975 WP_121297356.1 NAD(P)/FAD-dependent oxidoreductase -
  MPF86_RS01665 (MPF86_01665) ccoS 330850..331041 (-) 192 WP_001090940.1 cbb3-type cytochrome oxidase assembly protein CcoS -
  MPF86_RS01670 (MPF86_01670) - 331177..331758 (+) 582 WP_245064725.1 DedA family protein -
  MPF86_RS01675 (MPF86_01675) - 331849..332343 (+) 495 WP_000516046.1 flavodoxin -
  MPF86_RS01680 (MPF86_01680) ybeY 332397..332819 (+) 423 WP_245064742.1 rRNA maturation RNase YbeY -
  MPF86_RS01685 (MPF86_01685) - 332877..333410 (-) 534 WP_000549903.1 Fic family protein -
  MPF86_RS01690 (MPF86_01690) proC 333434..334207 (-) 774 WP_245064744.1 pyrroline-5-carboxylate reductase Machinery gene
  MPF86_RS01695 (MPF86_01695) hopL 334221..337925 (-) 3705 WP_245064746.1 Hop family outer membrane protein HopL -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28178.97 Da        Isoelectric Point: 9.3542

>NTDB_id=574548 MPF86_RS01690 WP_245064744.1 333434..334207(-) (proC) [Helicobacter pylori strain Hpfe088]
MEILQFIGYGNMAQAILEGSHEILSKRFILEITGRNPEKIAPFLQEKNIQARIIPYKDAIDIHQKFVFLLFKPYNLKDFN
YQGQAKSVLSALAGVGFEALSDAINSSHYLKCMPNIASKFALSSTAVCEKSPMPLISQKALSVIESFGNCVRVGNEEQVD
ASVATNGSALAFLSLVASSLKDAGIREGLNAKDSLELVKMSFKGFAKLLEKERPEMIIEQICTPKGATIEGLSVLEKKGV
RGAFIKACQKSVKKMRL

Nucleotide


Download         Length: 774 bp        

>NTDB_id=574548 MPF86_RS01690 WP_245064744.1 333434..334207(-) (proC) [Helicobacter pylori strain Hpfe088]
ATGGAAATCTTACAATTCATCGGCTATGGGAATATGGCTCAAGCGATTTTAGAAGGCTCTCATGAAATTTTATCCAAGCG
TTTTATTTTAGAGATTACCGGGCGAAACCCTGAAAAAATCGCCCCCTTTTTACAAGAAAAAAACATTCAAGCGCGCATCA
TTCCCTATAAAGACGCTATTGATATACACCAAAAATTCGTGTTTTTACTTTTTAAGCCTTATAACCTTAAGGATTTTAAT
TATCAAGGGCAAGCCAAAAGCGTTTTGAGCGCACTAGCTGGCGTGGGTTTTGAAGCTTTAAGCGATGCGATAAATTCTTC
ACATTACCTCAAATGCATGCCCAATATTGCGAGCAAGTTCGCCCTTTCTTCTACGGCGGTGTGCGAAAAATCACCCATGC
CCTTAATAAGCCAAAAGGCTTTGAGTGTTATTGAGAGTTTTGGGAATTGCGTGCGAGTGGGCAATGAAGAGCAGGTTGAT
GCCAGCGTGGCGACAAACGGGAGCGCGCTCGCGTTTTTAAGCTTGGTAGCGAGCAGTTTGAAAGATGCCGGTATTAGGGA
GGGCTTGAACGCTAAAGATTCTTTAGAATTGGTAAAAATGAGTTTTAAAGGCTTTGCCAAGCTTTTAGAAAAAGAACGCC
CCGAGATGATTATAGAGCAAATTTGCACCCCTAAAGGCGCAACGATTGAAGGCTTGAGCGTTTTAGAAAAAAAGGGGGTT
AGGGGAGCGTTTATCAAAGCATGCCAAAAGAGCGTGAAAAAAATGCGCCTCTAA

Domains

Predicted by InterProScan.

Pyrroline-5-carboxylate reductase dimerisation (P5CR_dimer)

(156-255)

NADP oxidoreductase coenzyme F420-dependent (F420_oxidored)

(4-94)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  proC Campylobacter jejuni subsp. jejuni 81-176

37.008

98.833

0.366