Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   MPG64_RS02630 Genome accession   NZ_CP094085
Coordinates   537427..538602 (-) Length   391 a.a.
NCBI ID   WP_245076800.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe095     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 532427..543602
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG64_RS02595 (MPG64_02595) - 532744..533058 (+) 315 WP_000867999.1 hypothetical protein -
  MPG64_RS02600 (MPG64_02600) - 533036..533812 (+) 777 WP_120928552.1 RNA polymerase sigma factor FliA -
  MPG64_RS02605 (MPG64_02605) fliM 533805..534869 (+) 1065 WP_000763605.1 flagellar motor switch protein FliM -
  MPG64_RS02610 (MPG64_02610) fliY 534873..535736 (+) 864 WP_245076794.1 flagellar motor switch protein FliY -
  MPG64_RS02615 (MPG64_02615) - 535765..536301 (+) 537 WP_245076796.1 YhcH/YjgK/YiaL family protein -
  MPG64_RS02620 (MPG64_02620) - 536298..536795 (+) 498 WP_245076798.1 DUF2147 domain-containing protein -
  MPG64_RS02625 (MPG64_02625) fur 536815..537267 (-) 453 WP_000824992.1 ferric iron uptake transcriptional regulator -
  MPG64_RS02630 (MPG64_02630) rarA 537427..538602 (-) 1176 WP_245076800.1 replication-associated recombination protein A Machinery gene
  MPG64_RS02635 (MPG64_02635) - 538599..538970 (-) 372 WP_000332994.1 helix-turn-helix transcriptional regulator -
  MPG64_RS02640 (MPG64_02640) - 538980..539846 (-) 867 WP_017283931.1 DnaJ family protein -
  MPG64_RS02645 (MPG64_02645) - 540014..541264 (+) 1251 WP_245076802.1 outer membrane family protein -
  MPG64_RS02650 (MPG64_02650) - 541357..542223 (-) 867 WP_080015634.1 5'-3' exonuclease -
  MPG64_RS02655 (MPG64_02655) - 542449..543345 (-) 897 WP_245076804.1 response regulator -

Sequence

Protein


Download         Length: 391 a.a.        Molecular weight: 43894.49 Da        Isoelectric Point: 8.1225

>NTDB_id=574400 MPG64_RS02630 WP_245076800.1 537427..538602(-) (rarA) [Helicobacter pylori strain Hpfe095]
MSLTSLLNPKSLEDFLGQEHLVGKDAPLFKALQSKHFPHAFFYGPPGVGKTSLAQIIARMLERPILLFNATDFKLEDLRL
KLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIMEKDHALILGASTQDPNYSLSHAIRSRSFIFELTPLNKSDLDKLCAK
ALTLLKKQIEPSAKTYLLNNSAGDARALLNLLDLSAKIENPITLETLQSLRPHSLNDGSYSDDTHYNLTSALIKSLRGSD
ENASIYYLARLIAGGENPEFIARRLVIFASEDIGNANPNALNLATSCLFSVKQIGYPEARIILSQCVIYLACSPKSNTAY
RAINQALDYIQKGSLYPVPKHLLPNAKDYLYPHDYNGYVKQDYLEKPLDLVSSQGIGFEKTLLEWLDKIRN

Nucleotide


Download         Length: 1176 bp        

>NTDB_id=574400 MPG64_RS02630 WP_245076800.1 537427..538602(-) (rarA) [Helicobacter pylori strain Hpfe095]
ATGAGCCTGACTTCGCTTTTAAACCCAAAAAGCCTAGAAGATTTTTTAGGCCAAGAGCATCTAGTAGGGAAAGACGCTCC
CTTATTTAAAGCCCTACAATCCAAACACTTCCCCCATGCCTTTTTCTATGGTCCTCCTGGCGTGGGTAAAACAAGCCTGG
CTCAAATCATCGCCCGCATGCTAGAGCGCCCCATTCTTTTATTCAATGCGACAGATTTCAAATTAGAGGATTTACGCCTT
AAGCTTAAAAATTACCAAAACACCCTTTTAAAACCCGTTGTTTTTATTGATGAAACCCACAGATTGAATAAAACCCAACA
AGAATTTTTACTCCCCATTATGGAAAAAGATCACGCTTTAATCTTAGGGGCTAGCACGCAAGATCCCAATTACAGCTTAA
GCCATGCGATCCGCTCAAGAAGTTTTATTTTTGAATTAACCCCCCTAAACAAGAGCGATTTAGACAAGCTTTGCGCTAAA
GCTTTAACATTACTCAAAAAACAAATAGAGCCTAGCGCTAAAACCTATCTTTTAAACAACAGCGCTGGCGATGCTAGAGC
GTTATTAAACCTTTTAGATTTGAGCGCTAAAATAGAAAATCCTATCACTTTAGAAACGCTGCAATCCTTACGGCCTCATA
GCCTAAATGATGGATCTTATAGCGATGATACGCATTATAATCTTACTAGCGCTTTAATCAAGTCTTTAAGAGGGAGCGAT
GAAAACGCTTCCATCTACTATCTAGCACGCTTGATTGCTGGCGGGGAAAACCCGGAATTTATCGCCAGAAGGCTGGTGAT
TTTTGCGAGCGAAGATATTGGTAACGCTAACCCAAACGCCCTAAATTTAGCCACTTCTTGCTTGTTTTCAGTCAAACAAA
TCGGCTACCCTGAAGCGCGCATCATTTTAAGCCAGTGCGTGATTTATCTGGCTTGTTCGCCCAAGTCTAACACGGCCTAT
AGAGCGATCAATCAGGCTTTGGATTATATTCAAAAAGGCTCACTCTACCCCGTTCCTAAACACCTGCTGCCTAACGCTAA
AGACTACCTTTACCCGCATGATTATAACGGCTATGTCAAACAAGATTATTTGGAAAAACCCCTAGATTTGGTTTCTTCTC
AAGGCATAGGGTTTGAAAAAACCCTTTTAGAATGGCTTGATAAGATAAGAAATTGA

Domains

Predicted by InterProScan.

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(7-117)

MgsA AAA+ ATPase C terminal (MgsA_C)

(238-389)

AAA C-terminal domain (AAA_assoc_2)

(168-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

37.621

100

0.396