Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB3   Type   Machinery gene
Locus tag   MPG63_RS07890 Genome accession   NZ_CP094082
Coordinates   368447..368707 (-) Length   86 a.a.
NCBI ID   WP_342369216.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe097     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 363447..373707
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG63_RS07830 - 363880..364008 (-) 129 WP_001185489.1 hypothetical protein -
  MPG63_RS01830 (MPG63_01830) - 364008..365942 (-) 1935 WP_245047593.1 type IA DNA topoisomerase -
  MPG63_RS01835 (MPG63_01835) - 365915..368434 (-) 2520 WP_245047595.1 VirB4 family type IV secretion system protein -
  MPG63_RS07890 comB3 368447..368707 (-) 261 WP_342369216.1 virB3 type IV secretion protein Machinery gene
  MPG63_RS01840 (MPG63_01840) - 368708..369010 (-) 303 WP_050850792.1 TrbC/VirB2 family protein -
  MPG63_RS01845 (MPG63_01845) - 369000..370916 (-) 1917 WP_245047597.1 toprim domain-containing protein -
  MPG63_RS01850 (MPG63_01850) - 370926..371689 (-) 764 Protein_359 hypothetical protein -
  MPG63_RS01855 (MPG63_01855) - 371737..371877 (+) 141 Protein_360 taurine catabolism dioxygenase TauD -
  MPG63_RS01860 (MPG63_01860) - 371892..372425 (-) 534 WP_000549905.1 Fic/DOC family protein -
  MPG63_RS01865 (MPG63_01865) proC 372449..373222 (-) 774 WP_245047599.1 pyrroline-5-carboxylate reductase -

Sequence

Protein


Download         Length: 86 a.a.        Molecular weight: 10168.06 Da        Isoelectric Point: 4.6082

>NTDB_id=574340 MPG63_RS07890 WP_342369216.1 368447..368707(-) (comB3) [Helicobacter pylori strain Hpfe097]
MILNYIETINVREISKKEKFLKLNMNSWIISFLSASFLFVWSLLYGVVLLVALITMFYILEFFDEDITNIILANLTLKND
TKEYYA

Nucleotide


Download         Length: 261 bp        

>NTDB_id=574340 MPG63_RS07890 WP_342369216.1 368447..368707(-) (comB3) [Helicobacter pylori strain Hpfe097]
ATGATTTTGAATTATATAGAGACCATCAATGTTAGAGAAATATCTAAAAAAGAGAAGTTTTTAAAGCTTAATATGAATAG
TTGGATCATTTCTTTTTTGAGCGCTTCTTTCTTATTTGTGTGGTCTCTATTATATGGCGTAGTGCTATTGGTGGCATTAA
TAACAATGTTTTACATACTAGAATTTTTTGATGAAGATATTACAAACATTATTTTGGCAAACCTAACGCTAAAGAATGAC
ACTAAAGAATATTATGCTTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB3 Helicobacter pylori 26695

44.828

100

0.453