Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   MPG38_RS05285 Genome accession   NZ_CP094080
Coordinates   1116024..1117199 (+) Length   391 a.a.
NCBI ID   WP_245100596.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe099     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1111024..1122199
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG38_RS05260 (MPG38_05260) - 1111310..1112206 (+) 897 WP_231191636.1 response regulator -
  MPG38_RS05265 (MPG38_05265) - 1112431..1113297 (+) 867 WP_245101656.1 5'-3' exonuclease -
  MPG38_RS05270 (MPG38_05270) - 1113362..1114612 (-) 1251 WP_245100594.1 outer membrane family protein -
  MPG38_RS05275 (MPG38_05275) - 1114780..1115646 (+) 867 WP_121025156.1 DnaJ C-terminal domain-containing protein -
  MPG38_RS05280 (MPG38_05280) - 1115656..1116027 (+) 372 WP_000332994.1 helix-turn-helix transcriptional regulator -
  MPG38_RS05285 (MPG38_05285) rarA 1116024..1117199 (+) 1176 WP_245100596.1 replication-associated recombination protein A Machinery gene
  MPG38_RS05290 (MPG38_05290) fur 1117360..1117812 (+) 453 WP_000824992.1 ferric iron uptake transcriptional regulator -
  MPG38_RS05295 (MPG38_05295) - 1117832..1118329 (-) 498 WP_245100598.1 DUF2147 domain-containing protein -
  MPG38_RS05300 (MPG38_05300) - 1118326..1118862 (-) 537 WP_245100601.1 YhcH/YjgK/YiaL family protein -
  MPG38_RS05305 (MPG38_05305) fliY 1118890..1119753 (-) 864 WP_245100603.1 flagellar motor switch protein FliY -
  MPG38_RS05310 (MPG38_05310) fliM 1119757..1120821 (-) 1065 WP_000763605.1 flagellar motor switch protein FliM -
  MPG38_RS05315 (MPG38_05315) - 1120814..1121590 (-) 777 WP_120928552.1 RNA polymerase sigma factor FliA -
  MPG38_RS05320 (MPG38_05320) - 1121568..1121882 (-) 315 WP_000868000.1 hypothetical protein -

Sequence

Protein


Download         Length: 391 a.a.        Molecular weight: 43969.55 Da        Isoelectric Point: 7.8110

>NTDB_id=574282 MPG38_RS05285 WP_245100596.1 1116024..1117199(+) (rarA) [Helicobacter pylori strain Hpfe099]
MSLTSLLNPKSLEDFLGQEHLIGKDAPLFKALQSKHFPHTFFYGPPGVGKTSLAQIIARMLERPILLFNATDFKLEDLRL
KLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIMEKDHALILGASTQDPNYSLSHAIRSRSFIFELTPLNKSDLDKLCTK
ALTLLKKQIEPSAKTYLLNNSAGDARALLNLLDLSAKIEDPITLETLQSLRPHSLNDGSYSDDTHYNLTSALIKSLRGSD
ENASIYYLARLIAGGENPEFIARRLVVFASEDIGNANPNALNLATSCLFSVKQIGYPEARIILSQCVIYLACSPKSNTAY
RAINQALDYIQKGSLYPIPKHLLPNAKDYLYPHDYNGYVKQDYLEKPLDLVSSQGIGFEKTLLEWLDKIRN

Nucleotide


Download         Length: 1176 bp        

>NTDB_id=574282 MPG38_RS05285 WP_245100596.1 1116024..1117199(+) (rarA) [Helicobacter pylori strain Hpfe099]
ATGAGCCTGACTTCGCTTTTAAACCCAAAAAGCCTAGAAGATTTTTTAGGCCAAGAGCATTTAATAGGGAAAGACGCCCC
CTTATTTAAAGCCCTACAATCCAAACACTTCCCCCATACCTTTTTCTATGGCCCTCCTGGCGTGGGAAAAACAAGCCTGG
CTCAAATCATCGCCCGCATGCTAGAACGCCCCATTCTTTTATTCAATGCGACGGATTTCAAATTAGAGGATTTACGCCTT
AAGCTTAAAAATTACCAAAACACCCTTTTAAAACCCGTTGTTTTTATTGATGAAACCCACAGATTGAATAAAACCCAACA
AGAATTTTTACTCCCCATTATGGAAAAAGATCACGCTTTAATCTTAGGGGCTAGCACGCAAGATCCTAATTACAGCCTAA
GCCATGCGATCCGCTCAAGAAGTTTTATTTTTGAATTAACCCCCCTAAACAAGAGCGATTTAGACAAGCTTTGCACTAAA
GCTTTAACATTGCTCAAAAAACAAATAGAGCCTAGCGCTAAAACCTATCTTTTAAACAACAGCGCTGGCGATGCTAGAGC
GTTATTAAACCTTTTAGATTTGAGCGCCAAAATAGAAGATCCTATCACTTTAGAAACGCTGCAATCCTTACGGCCTCATA
GCCTAAATGACGGATCTTATAGCGATGATACGCATTACAATCTTACTAGCGCTCTAATCAAGTCTTTAAGAGGGAGCGAT
GAAAACGCTTCCATCTATTATCTGGCGCGTTTGATTGCTGGCGGGGAAAACCCGGAATTTATCGCCAGAAGGCTGGTGGT
TTTTGCGAGCGAAGATATTGGTAACGCTAACCCAAACGCCCTAAATTTAGCCACTTCTTGCTTGTTTTCAGTCAAACAAA
TTGGCTACCCTGAAGCGCGCATCATTTTAAGCCAATGCGTGATTTATCTGGCTTGCTCGCCCAAGTCTAACACGGCCTAT
AGAGCGATCAATCAGGCTTTGGATTATATTCAAAAAGGCTCACTCTACCCCATTCCTAAACACCTGCTGCCTAACGCTAA
AGACTACCTTTACCCGCATGATTATAACGGCTATGTCAAACAAGATTATTTGGAAAAACCCCTAGATTTGGTTTCTTCTC
AAGGCATAGGGTTTGAAAAAACCCTTTTAGAATGGCTTGATAAGATAAGAAATTGA

Domains

Predicted by InterProScan.

AAA C-terminal domain (AAA_assoc_2)

(168-237)

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(7-117)

MgsA AAA+ ATPase C terminal (MgsA_C)

(238-389)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

37.74

100

0.402