Detailed information    

insolico Bioinformatically predicted

Overview

Name   proC   Type   Machinery gene
Locus tag   HPPMSS1_RS01760 Genome accession   NZ_AP017633
Coordinates   357972..358745 (-) Length   257 a.a.
NCBI ID   WP_077232327.1    Uniprot ID   -
Organism   Helicobacter pylori strain PMSS1     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 352972..363745
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPPMSS1_RS01725 (HPATCC43504_RS01780) - 353041..354201 (+) 1161 WP_077232331.1 HP1165 family MFS efflux transporter -
  HPPMSS1_RS01730 (HPATCC43504_RS01785) - 354208..355182 (-) 975 WP_077232330.1 NAD(P)/FAD-dependent oxidoreductase -
  HPPMSS1_RS01735 (HPATCC43504_RS01790) ccoS 355209..355400 (-) 192 WP_001090949.1 cbb3-type cytochrome oxidase assembly protein CcoS -
  HPPMSS1_RS01740 (HPATCC43504_RS01795) - 355523..356104 (+) 582 WP_097701426.1 DedA family protein -
  HPPMSS1_RS01745 (HPATCC43504_RS01800) - 356194..356688 (+) 495 WP_077232329.1 flavodoxin -
  HPPMSS1_RS01750 (HPATCC43504_RS01805) ybeY 356743..357165 (+) 423 WP_077232328.1 rRNA maturation RNase YbeY -
  HPPMSS1_RS01755 (HPATCC43504_RS01810) - 357411..357944 (-) 534 WP_003016818.1 protein adenylyltransferase Fic -
  HPPMSS1_RS01760 (HPATCC43504_RS01815) proC 357972..358745 (-) 774 WP_077232327.1 pyrroline-5-carboxylate reductase Machinery gene
  HPPMSS1_RS01765 (HPATCC43504_RS01820) hopL 358759..362454 (-) 3696 WP_077232326.1 Hop family outer membrane protein HopL -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28176.84 Da        Isoelectric Point: 8.3369

>NTDB_id=57428 HPPMSS1_RS01760 WP_077232327.1 357972..358745(-) (proC) [Helicobacter pylori strain PMSS1]
MEILQFIGYGNMAQAILEGAHEILSKRFILEITGRNPEKIAPFLQEKNIQAQIVPYKDAINIHQKFVFLLFKPYNLKDFN
YQGQAKSVLSALAGVSFEALSNAINSLHYLKCMPNIASKFALSSTAVCEKSVAPSISEKALNIIESFGNCVRVSHEEQVD
ASIATNGSVLAFLSLVASGLKDAGIREGLNAKDSLELVEMSFKGFAKLLEKERPEVIIEQICTPKGATIEGLSVLEKKGV
RGAFIKACHESVKKMRL

Nucleotide


Download         Length: 774 bp        

>NTDB_id=57428 HPPMSS1_RS01760 WP_077232327.1 357972..358745(-) (proC) [Helicobacter pylori strain PMSS1]
ATGGAAATCTTACAATTCATCGGCTATGGGAACATGGCTCAAGCGATTTTAGAAGGCGCTCATGAAATTTTATCCAAGCG
TTTTATTTTAGAGATTACTGGGCGAAACCCTGAAAAAATCGCCCCCTTTTTACAAGAAAAAAACATTCAAGCCCAAATCG
TGCCTTACAAAGACGCTATTAATATACACCAAAAATTCGTGTTTTTATTGTTTAAGCCTTATAACCTTAAGGATTTTAAT
TATCAAGGGCAAGCTAAAAGCGTTTTGAGCGCTTTAGCTGGCGTGAGTTTTGAAGCTTTAAGCAATGCGATTAATTCTTT
ACATTACTTAAAATGCATGCCTAACATTGCGAGCAAGTTCGCCCTATCTTCTACGGCGGTGTGTGAAAAATCGGTTGCGC
CTTCAATAAGCGAGAAAGCTTTGAATATTATTGAGAGTTTTGGGAATTGCGTGCGAGTGAGCCATGAAGAGCAGGTGGAT
GCCAGTATAGCGACCAATGGGAGCGTGCTCGCGTTTTTGAGCTTGGTAGCGAGCGGTTTGAAAGACGCCGGCATTAGAGA
GGGCTTGAACGCTAAAGATTCTTTAGAGTTGGTGGAAATGAGTTTTAAAGGCTTTGCCAAGCTGTTAGAAAAAGAACGCC
CTGAGGTGATTATAGAGCAAATTTGCACCCCTAAAGGCGCAACGATTGAAGGCTTGAGCGTTTTAGAAAAAAAGGGGGTT
AGGGGAGCGTTTATAAAAGCATGCCATGAAAGCGTGAAAAAAATGCGCCTCTAA

Domains

Predicted by InterProScan.

NADP oxidoreductase coenzyme F420-dependent (F420_oxidored)

(4-94)

Pyrroline-5-carboxylate reductase dimerisation (P5CR_dimer)

(156-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  proC Campylobacter jejuni subsp. jejuni 81-176

36.614

98.833

0.362

Multiple sequence alignment