Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   A7A11_RS04955 Genome accession   NZ_CP076272
Coordinates   1073003..1073632 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain E21845/O/A     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1068003..1078632
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A7A11_RS04935 ycbZ 1068393..1070153 (-) 1761 WP_000156526.1 Lon protease family protein -
  A7A11_RS04940 matP 1070339..1070791 (+) 453 WP_000877158.1 macrodomain Ter protein MatP -
  A7A11_RS04945 ompA 1070866..1071918 (-) 1053 WP_000750419.1 porin OmpA -
  A7A11_RS04950 sulA 1072275..1072784 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  A7A11_RS04955 sxy/tfoX 1073003..1073632 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  A7A11_RS04960 yccS 1073595..1075757 (-) 2163 WP_000875044.1 YccS family putative transporter -
  A7A11_RS04965 yccF 1075767..1076213 (-) 447 WP_001261231.1 YccF domain-containing protein -
  A7A11_RS04970 helD 1076336..1078390 (+) 2055 WP_000420533.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=574254 A7A11_RS04955 WP_000839153.1 1073003..1073632(+) (sxy/tfoX) [Escherichia coli strain E21845/O/A]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=574254 A7A11_RS04955 WP_000839153.1 1073003..1073632(+) (sxy/tfoX) [Escherichia coli strain E21845/O/A]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1