Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   MPG05_RS04980 Genome accession   NZ_CP094079
Coordinates   1046329..1047504 (+) Length   391 a.a.
NCBI ID   WP_128480033.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe100     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1041329..1052504
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG05_RS04955 (MPG05_04955) - 1041657..1042553 (+) 897 WP_245070102.1 response regulator -
  MPG05_RS04960 (MPG05_04960) - 1042779..1043645 (+) 867 WP_245071255.1 5'-3' exonuclease -
  MPG05_RS04965 (MPG05_04965) - 1043667..1044917 (-) 1251 WP_245070104.1 outer membrane family protein -
  MPG05_RS04970 (MPG05_04970) - 1045085..1045951 (+) 867 WP_245070106.1 DnaJ C-terminal domain-containing protein -
  MPG05_RS04975 (MPG05_04975) - 1045961..1046332 (+) 372 WP_000332994.1 helix-turn-helix transcriptional regulator -
  MPG05_RS04980 (MPG05_04980) rarA 1046329..1047504 (+) 1176 WP_128480033.1 replication-associated recombination protein A Machinery gene
  MPG05_RS04985 (MPG05_04985) fur 1047665..1048117 (+) 453 WP_000824985.1 ferric iron uptake transcriptional regulator -
  MPG05_RS04990 (MPG05_04990) - 1048136..1048633 (-) 498 WP_000780273.1 DUF2147 domain-containing protein -
  MPG05_RS04995 (MPG05_04995) - 1048630..1049166 (-) 537 WP_245070108.1 YhcH/YjgK/YiaL family protein -
  MPG05_RS05000 (MPG05_05000) fliY 1049194..1050057 (-) 864 WP_245070110.1 flagellar motor switch protein FliY -
  MPG05_RS05005 (MPG05_05005) fliM 1050061..1051125 (-) 1065 WP_245070112.1 flagellar motor switch protein FliM -
  MPG05_RS05010 (MPG05_05010) - 1051118..1051903 (-) 786 WP_245070114.1 RNA polymerase sigma factor FliA -
  MPG05_RS05015 (MPG05_05015) - 1051881..1052195 (-) 315 WP_000867999.1 hypothetical protein -

Sequence

Protein


Download         Length: 391 a.a.        Molecular weight: 43879.47 Da        Isoelectric Point: 7.8110

>NTDB_id=574240 MPG05_RS04980 WP_128480033.1 1046329..1047504(+) (rarA) [Helicobacter pylori strain Hpfe100]
MSLTSLLNPKSLEDFLGQEHLIGKDAPLFKALQSKHFPHAFFYGPPGVGKTSLAQIIARMLERPILLFNATDFKLEDLRL
KLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIMEKDHALILGASTQDPNYSLSHAIRSRSFIFELTPLNKSDLDKLCAK
ALTLLKKQIEPSAKTYLLNNSAGDARALLNLLDLSAKIEDPITLETLQSLRPHSLNDGSYSDDTHYNLTSALIKSLRGSD
ENASIYYLARLIAGGENPEFIARRLVVFASEDIGNANPNALNLAASCLFSVKQIGYPEARIILSQCVIYLACSPKSNTAY
RAINQALDYIQKGSLYPIPKHLLPNAKDYLYPHDYNGYVKQDYLEKPLDLVSSQGIGFEKTLLEWLDKIRN

Nucleotide


Download         Length: 1176 bp        

>NTDB_id=574240 MPG05_RS04980 WP_128480033.1 1046329..1047504(+) (rarA) [Helicobacter pylori strain Hpfe100]
ATGAGCCTGACTTCGCTTTTAAACCCAAAAAGCCTAGAAGATTTTTTAGGCCAAGAGCATCTAATAGGCAAAGACGCCCC
CTTATTTAAAGCCCTACAATCCAAACACTTCCCTCATGCCTTTTTCTATGGCCCTCCTGGCGTGGGTAAAACAAGCCTGG
CTCAAATCATTGCCCGCATGCTAGAGCGCCCCATTCTTTTATTCAATGCGACGGATTTCAAATTAGAGGATTTACGCCTT
AAGCTTAAAAATTACCAAAACACCCTTTTAAAACCGGTTGTTTTTATTGATGAAACCCACAGATTGAATAAAACCCAACA
AGAATTTTTACTCCCCATTATGGAAAAAGATCACGCTTTAATCTTAGGGGCTAGCACGCAAGATCCTAATTACAGCCTAA
GCCATGCGATCCGCTCAAGAAGTTTTATTTTTGAATTAACCCCCCTAAACAAGAGCGATTTAGACAAGCTTTGCGCTAAA
GCTTTAACATTGCTCAAAAAACAAATAGAGCCTAGCGCTAAAACCTATCTTTTAAACAACAGCGCTGGCGATGCTAGAGC
GTTATTAAACCTTTTAGATTTGAGTGCTAAGATAGAAGATCCTATCACTTTAGAAACGCTGCAATCCTTACGGCCTCATA
GCCTGAATGATGGATCTTATAGCGACGATACGCATTATAATCTTACTAGCGCTTTAATCAAGTCTTTAAGAGGGAGCGAT
GAAAACGCTTCCATCTATTATCTGGCACGCTTGATTGCTGGCGGGGAAAACCCGGAATTTATCGCCAGAAGGTTGGTGGT
TTTTGCGAGCGAAGATATTGGTAACGCTAACCCAAACGCCCTAAATTTAGCCGCTTCTTGCTTGTTTTCAGTCAAACAAA
TCGGCTACCCTGAAGCGCGCATCATTTTAAGCCAATGCGTGATTTATCTGGCTTGTTCGCCCAAGTCTAACACGGCTTAT
AGAGCGATCAACCAGGCTTTGGATTATATTCAAAAAGGCTCACTCTACCCCATTCCTAAACACCTGCTGCCTAACGCTAA
AGACTACCTTTACCCGCATGATTATAACGGCTATGTCAAACAAGATTATTTGGAAAAACCCCTAGATTTGGTTTCTTCTC
AAGGCATAGGGTTTGAAAAAACCCTTTTAGAATGGCTTGATAAGATAAGAAATTGA

Domains

Predicted by InterProScan.

AAA C-terminal domain (AAA_assoc_2)

(168-237)

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(7-117)

MgsA AAA+ ATPase C terminal (MgsA_C)

(238-389)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

37.379

100

0.394