Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   MPF83_RS04975 Genome accession   NZ_CP094078
Coordinates   1048265..1049440 (+) Length   391 a.a.
NCBI ID   WP_245053437.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe101     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1043265..1054440
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPF83_RS04950 (MPF83_04950) - 1043522..1044418 (+) 897 WP_000697547.1 OriC activity response regulator -
  MPF83_RS04955 (MPF83_04955) - 1044644..1045510 (+) 867 WP_245054862.1 5'-3' exonuclease -
  MPF83_RS04960 (MPF83_04960) - 1045603..1046853 (-) 1251 WP_245053433.1 outer membrane family protein -
  MPF83_RS04965 (MPF83_04965) - 1047021..1047887 (+) 867 WP_245053435.1 DnaJ C-terminal domain-containing protein -
  MPF83_RS04970 (MPF83_04970) - 1047897..1048268 (+) 372 WP_000332994.1 helix-turn-helix transcriptional regulator -
  MPF83_RS04975 (MPF83_04975) rarA 1048265..1049440 (+) 1176 WP_245053437.1 replication-associated recombination protein A Machinery gene
  MPF83_RS04980 (MPF83_04980) fur 1049600..1050052 (+) 453 WP_000824985.1 ferric iron uptake transcriptional regulator -
  MPF83_RS04985 (MPF83_04985) - 1050072..1050569 (-) 498 WP_001919329.1 DUF2147 domain-containing protein -
  MPF83_RS04990 (MPF83_04990) - 1050566..1051102 (-) 537 WP_245053439.1 YhcH/YjgK/YiaL family protein -
  MPF83_RS04995 (MPF83_04995) fliY 1051130..1051993 (-) 864 WP_245053441.1 flagellar motor switch protein FliY -
  MPF83_RS05000 (MPF83_05000) fliM 1051997..1053061 (-) 1065 WP_024421782.1 flagellar motor switch protein FliM -
  MPF83_RS05005 (MPF83_05005) - 1053054..1053833 (-) 780 WP_245053443.1 RNA polymerase sigma factor FliA -
  MPF83_RS05010 (MPF83_05010) - 1053811..1054125 (-) 315 WP_245053445.1 hypothetical protein -

Sequence

Protein


Download         Length: 391 a.a.        Molecular weight: 43837.44 Da        Isoelectric Point: 8.1219

>NTDB_id=574199 MPF83_RS04975 WP_245053437.1 1048265..1049440(+) (rarA) [Helicobacter pylori strain Hpfe101]
MSLTSLLNPKSLEDFLGQEHLIGKDAPLFKALQSKHFPHAFFYGPPGVGKTSLAQIIARMLERPILLFNATDFKLEDLRL
KLKNYQNTLLKPVVFIDETHRLNKAQQEFLLPIMEKDHALILGASTQDPNYSLSHAIRSRSFIFELTPLKKSDLDKLCAK
ALTLLKKQIEPSAKTYLLNNSAGDARALLNLLDLSAKIEDPITLETLQSLRSHSPNDGSYSDDTHYNLTSALIKSLRGSD
ENASIYYLARLIAGGENPEFIARRLVVFASEDIGNANPNALNLAASCLFSVKQIGYPEARIILSQCVIYLACSPKSNTAY
RAINQALDYIQKGSLYPIPKHLLPNAKDYLYPHDYNGYVKQDYLEKPLDLVSSQGIGFEKTLLEWLDKIRN

Nucleotide


Download         Length: 1176 bp        

>NTDB_id=574199 MPF83_RS04975 WP_245053437.1 1048265..1049440(+) (rarA) [Helicobacter pylori strain Hpfe101]
ATGAGCCTGACTTCGCTTTTAAACCCAAAAAGCCTGGAAGATTTTTTAGGCCAAGAGCATCTAATAGGCAAAGACGCCCC
CTTATTTAAAGCCCTACAATCCAAACACTTCCCCCACGCCTTTTTCTATGGCCCTCCTGGCGTGGGTAAAACAAGCCTGG
CTCAAATCATCGCCCGCATGCTGGAGCGCCCCATTCTTTTATTCAATGCGACAGATTTCAAATTAGAGGATTTACGCCTC
AAGCTTAAAAATTACCAAAACACCCTTTTAAAACCCGTTGTTTTTATTGATGAAACCCACAGATTGAATAAAGCCCAACA
AGAATTTTTACTCCCCATTATGGAAAAAGATCACGCTTTAATCTTAGGGGCTAGCACGCAAGATCCTAATTACAGCCTAA
GCCATGCGATCCGCTCAAGAAGTTTTATTTTTGAATTAACCCCCCTAAAAAAAAGCGATTTAGACAAGCTTTGCGCTAAA
GCTTTAACATTGCTCAAAAAACAAATAGAGCCTAGTGCTAAAACCTATCTTTTAAACAACAGCGCTGGCGATGCCAGAGC
GTTATTAAACCTTTTAGATTTGAGCGCTAAGATAGAAGATCCTATCACTTTAGAAACGCTACAATCCTTACGGTCTCATA
GCCCAAATGACGGATCTTATAGTGATGATACACATTATAATCTTACTAGCGCATTAATCAAGTCTTTAAGAGGGAGCGAT
GAAAACGCTTCCATCTATTATCTAGCACGCTTGATTGCTGGCGGGGAAAACCCGGAATTTATCGCCAGAAGGCTGGTGGT
TTTTGCGAGCGAAGATATTGGTAACGCTAACCCAAACGCCCTAAATTTAGCCGCTTCTTGCTTGTTTTCAGTCAAACAAA
TCGGCTACCCTGAAGCGCGCATCATTTTAAGCCAATGCGTGATTTATCTGGCTTGTTCGCCCAAGTCTAACACGGCCTAT
AGAGCGATCAATCAGGCTTTGGATTATATTCAAAAAGGCTCACTCTACCCCATTCCTAAACACCTGCTGCCTAACGCTAA
AGACTACCTTTACCCGCATGATTATAACGGCTATGTCAAACAAGATTATTTGGAAAAACCCCTAGATTTGGTTTCTTCTC
AAGGCATAGGGTTTGAAAAAACCCTTTTAGAATGGCTTGATAAGATAAGGAATTGA

Domains

Predicted by InterProScan.

MgsA AAA+ ATPase C terminal (MgsA_C)

(238-389)

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(7-117)

AAA C-terminal domain (AAA_assoc_2)

(168-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

37.379

100

0.394