Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   MPG56_RS05125 Genome accession   NZ_CP094076
Coordinates   1087855..1089030 (+) Length   391 a.a.
NCBI ID   WP_245043325.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe102     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1082855..1094030
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG56_RS05100 (MPG56_05100) - 1083184..1084080 (+) 897 WP_245043321.1 response regulator -
  MPG56_RS05105 (MPG56_05105) - 1084305..1085171 (+) 867 WP_245044474.1 5'-3' exonuclease -
  MPG56_RS05110 (MPG56_05110) - 1085193..1086443 (-) 1251 WP_245043323.1 outer membrane family protein -
  MPG56_RS05115 (MPG56_05115) - 1086611..1087477 (+) 867 WP_017283931.1 DnaJ family protein -
  MPG56_RS05120 (MPG56_05120) - 1087487..1087858 (+) 372 WP_000332994.1 helix-turn-helix transcriptional regulator -
  MPG56_RS05125 (MPG56_05125) rarA 1087855..1089030 (+) 1176 WP_245043325.1 replication-associated recombination protein A Machinery gene
  MPG56_RS05130 (MPG56_05130) fur 1089189..1089641 (+) 453 WP_000824992.1 ferric iron uptake transcriptional regulator -
  MPG56_RS05135 (MPG56_05135) - 1089661..1090158 (-) 498 WP_245043327.1 DUF2147 domain-containing protein -
  MPG56_RS05140 (MPG56_05140) - 1090155..1090691 (-) 537 WP_180658830.1 YhcH/YjgK/YiaL family protein -
  MPG56_RS05145 (MPG56_05145) fliY 1090720..1091583 (-) 864 WP_245043328.1 flagellar motor switch protein FliY -
  MPG56_RS05150 (MPG56_05150) fliM 1091587..1092651 (-) 1065 WP_001919332.1 flagellar motor switch protein FliM -
  MPG56_RS05155 (MPG56_05155) - 1092644..1093420 (-) 777 WP_000602379.1 RNA polymerase sigma factor FliA -
  MPG56_RS05160 (MPG56_05160) - 1093398..1093712 (-) 315 WP_000867999.1 hypothetical protein -

Sequence

Protein


Download         Length: 391 a.a.        Molecular weight: 43891.53 Da        Isoelectric Point: 7.8110

>NTDB_id=574159 MPG56_RS05125 WP_245043325.1 1087855..1089030(+) (rarA) [Helicobacter pylori strain Hpfe102]
MSLTSLLNPKSLEDFLGQEHLIGKDAPLFKALQSKHFPHAFFYGPPGVGKTSLAQIIARMLERPILLFNATDFKLEDLRL
KLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIMEKDHALILGASTQDPNYSLSHAIRSRSFIFELTPLNKSDLDKLCAK
ALILLKKQIEPSAKTYLLNNSAGDARALLNLLDLSAKIEDPITLETLQSLRPHSLNDGSYSDDTHYNLTSALIKSLRGSD
ENASIYYLARLIAGGENPEFIARRLVVFASEDIGNANPNALNLAASCLFSVKQIGYPEARIILSQCVIYLACSPKSNTAY
RAINQALDYIQKGSLYPIPKHLLPNAKDYLYPHDYNGYVKQDYLEKPLDLVSSQGIGFEKTLLEWLDKIRN

Nucleotide


Download         Length: 1176 bp        

>NTDB_id=574159 MPG56_RS05125 WP_245043325.1 1087855..1089030(+) (rarA) [Helicobacter pylori strain Hpfe102]
ATGAGCCTGACTTCGCTTTTAAACCCAAAAAGCCTAGAAGATTTTTTAGGCCAAGAGCATCTAATAGGCAAAGACGCCCC
CTTATTTAAAGCCTTACAATCCAAACACTTCCCCCACGCCTTTTTCTATGGCCCTCCTGGCGTGGGTAAAACAAGCCTGG
CTCAAATCATCGCCCGCATGCTAGAGCGCCCCATTCTTTTATTCAATGCGACGGATTTCAAATTAGAGGATTTACGCCTT
AAGCTTAAAAATTACCAAAACACCCTTTTAAAACCGGTTGTTTTTATTGATGAAACCCACAGATTGAATAAAACCCAACA
AGAATTTTTACTCCCCATTATGGAAAAAGATCACGCTTTAATCTTAGGGGCTAGCACGCAAGATCCTAATTACAGCTTAA
GCCATGCGATCCGCTCAAGAAGTTTTATTTTTGAATTAACCCCCCTAAACAAGAGCGATTTAGACAAGCTTTGCGCTAAA
GCTTTAATATTGCTCAAAAAACAAATAGAGCCTAGCGCTAAAACCTATCTTTTAAACAACAGCGCTGGCGATGCTAGAGC
GTTATTAAACCTTTTAGATTTGAGTGCTAAGATAGAAGATCCTATCACTTTAGAAACGCTGCAATCCTTACGGCCTCATA
GCCTAAATGATGGATCTTATAGCGATGATACGCATTATAATCTTACTAGCGCTCTAATCAAGTCTTTAAGAGGGAGCGAT
GAAAACGCTTCCATCTATTATCTGGCGCGTTTGATTGCTGGCGGAGAAAACCCGGAATTTATCGCCAGAAGGCTGGTGGT
TTTTGCGAGCGAAGATATTGGTAACGCTAACCCAAACGCCCTAAATTTAGCCGCTTCTTGCTTGTTTTCAGTCAAACAAA
TCGGCTACCCTGAAGCGCGCATCATTTTAAGCCAATGCGTGATTTATCTGGCTTGTTCGCCCAAGTCTAACACGGCTTAT
AGAGCGATCAATCAGGCTTTGGATTATATTCAAAAAGGCTCACTCTACCCCATTCCTAAACACCTACTGCCTAACGCTAA
AGACTACCTTTACCCGCATGATTATAACGGCTATGTCAAACAAGATTATTTGGAAAAACCCCTAGATTTGGTTTCTTCTC
AAGGCATAGGGTTTGAAAAAACCCTTTTAGAATGGCTTGATAAGATAAGAAATTGA

Domains

Predicted by InterProScan.

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(7-117)

AAA C-terminal domain (AAA_assoc_2)

(168-237)

MgsA AAA+ ATPase C terminal (MgsA_C)

(238-389)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

37.379

100

0.394