Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   HPATCC43504_RS06595 Genome accession   NZ_AP017632
Coordinates   1384930..1386105 (+) Length   391 a.a.
NCBI ID   WP_108169203.1    Uniprot ID   -
Organism   Helicobacter pylori strain ATCC 43504     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1379930..1391105
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPATCC43504_RS06570 (HPATCC43504_01316) - 1380186..1381082 (+) 897 WP_000697532.1 OriC activity response regulator -
  HPATCC43504_RS06575 (HPATCC43504_01317) - 1381338..1382174 (+) 837 WP_108169200.1 5'-3' exonuclease -
  HPATCC43504_RS06580 (HPATCC43504_01318) - 1382268..1383518 (-) 1251 WP_108169201.1 hypothetical protein -
  HPATCC43504_RS06585 (HPATCC43504_01319) - 1383686..1384552 (+) 867 WP_108169202.1 DnaJ C-terminal domain-containing protein -
  HPATCC43504_RS06590 (HPATCC43504_01320) - 1384562..1384933 (+) 372 WP_000332994.1 helix-turn-helix transcriptional regulator -
  HPATCC43504_RS06595 (HPATCC43504_01321) rarA 1384930..1386105 (+) 1176 WP_108169203.1 replication-associated recombination protein A Machinery gene
  HPATCC43504_RS06600 (HPATCC43504_01322) fur 1386265..1386717 (+) 453 WP_079341223.1 ferric iron uptake transcriptional regulator -
  HPATCC43504_RS06605 (HPATCC43504_01323) - 1386738..1387235 (-) 498 WP_108169204.1 DUF2147 domain-containing protein -
  HPATCC43504_RS06610 (HPATCC43504_01324) - 1387232..1387768 (-) 537 WP_108169205.1 YhcH/YjgK/YiaL family protein -
  HPATCC43504_RS06615 (HPATCC43504_01325) fliY 1387797..1388660 (-) 864 WP_108169206.1 flagellar motor switch protein FliY -
  HPATCC43504_RS06620 (HPATCC43504_01326) fliM 1388664..1389728 (-) 1065 WP_000763575.1 flagellar motor switch protein FliM -
  HPATCC43504_RS06625 (HPATCC43504_01327) - 1389721..1390488 (-) 768 WP_108169207.1 RNA polymerase sigma factor FliA -
  HPATCC43504_RS06630 (HPATCC43504_01328) - 1390466..1390780 (-) 315 WP_000868000.1 hypothetical protein -

Sequence

Protein


Download         Length: 391 a.a.        Molecular weight: 43878.65 Da        Isoelectric Point: 8.2164

>NTDB_id=57413 HPATCC43504_RS06595 WP_108169203.1 1384930..1386105(+) (rarA) [Helicobacter pylori strain ATCC 43504]
MSLTSLLNPKSLEDFLGQEHLIGKDAPLFKALQSKHFPHAFFYGPPGVGKTSLAQIIACMLERPILLFNATDFKLEDLRL
KLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIMEKDHALILGASTQDPNYSLSHAIRSRSFIFELTPLKKSDLDKLCIK
ALTLLKKQIEPDAKTYLLNNSAGDARALLNLLDLSAKIEDPITLKTLQSLRPHSLNDGSYSDDTHYNLTSALIKSLRGSD
ENASIYYLARLIAGGENPEFIARRLVIFASEDIGNANPNALNLATSCLFSVKQIGYPEARIILSQCVIYLACSPKSNTAY
RAINQALDCVQKGSLYPIPKHLLPNAKDYLYPHDYNGYVKQDYLEKPLNLVSSQGIGFEKTLLEWLDKIRN

Nucleotide


Download         Length: 1176 bp        

>NTDB_id=57413 HPATCC43504_RS06595 WP_108169203.1 1384930..1386105(+) (rarA) [Helicobacter pylori strain ATCC 43504]
ATGAGCCTGACTTCGCTTTTAAACCCAAAAAGCCTAGAAGATTTTTTAGGCCAAGAGCATCTAATAGGGAAAGACGCCCC
CTTATTTAAAGCCCTACAATCCAAACACTTCCCCCATGCCTTTTTCTATGGCCCTCCTGGCGTGGGTAAAACAAGCCTGG
CTCAAATCATCGCCTGCATGCTGGAGCGCCCCATTCTTTTATTCAATGCGACGGATTTTAAACTAGAGGATTTGCGTCTT
AAGCTTAAAAATTACCAAAACACCCTTTTAAAACCCGTTGTTTTTATTGATGAAACCCACAGATTGAATAAAACCCAACA
AGAATTTTTACTCCCCATTATGGAAAAAGATCACGCTTTAATCTTAGGGGCTAGCACGCAAGATCCTAATTACAGTTTAA
GCCATGCGATCCGCTCAAGAAGTTTTATTTTTGAATTAACCCCCCTAAAAAAGAGCGATTTAGACAAGCTTTGCATTAAA
GCTTTAACATTGCTCAAAAAACAAATAGAGCCTGACGCTAAAACCTATCTTTTAAACAACAGCGCTGGCGACGCTAGAGC
GTTATTAAACCTTTTAGATTTGAGCGCTAAAATAGAAGATCCTATCACTTTAAAAACGCTGCAATCCTTACGGCCTCATA
GCCTAAATGACGGATCTTATAGCGATGATACGCATTATAACCTCACTAGCGCGTTAATCAAATCTTTAAGAGGGAGCGAT
GAAAACGCTTCCATTTATTATCTGGCGCGCTTGATTGCTGGCGGGGAAAACCCGGAATTTATCGCCAGAAGGTTGGTGAT
TTTTGCGAGCGAAGATATTGGTAACGCTAACCCAAACGCCCTTAATTTAGCCACTTCTTGCTTGTTTTCAGTCAAACAAA
TCGGCTACCCTGAAGCGCGCATCATTTTAAGCCAGTGCGTGATTTATCTGGCTTGTTCACCCAAGTCTAACACGGCTTAT
AGAGCGATCAATCAGGCTTTGGATTGCGTTCAAAAGGGCTCACTCTACCCTATTCCTAAACACCTGTTGCCTAACGCTAA
AGACTACCTTTACCCGCATGATTATAACGGCTATGTCAAACAAGATTATTTAGAAAAACCCCTAAATCTGGTTTCTTCTC
AAGGCATAGGGTTTGAAAAAACCCTTTTAGAATGGCTTGATAAGATAAGAAATTGA

Domains

Predicted by InterProScan.

MgsA AAA+ ATPase C terminal (MgsA_C)

(238-389)

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(7-117)

AAA C-terminal domain (AAA_assoc_2)

(168-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

36.779

100

0.391

Multiple sequence alignment