Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   MPG31_RS04980 Genome accession   NZ_CP094074
Coordinates   1043220..1044395 (+) Length   391 a.a.
NCBI ID   WP_245014982.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe103     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1038220..1049395
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG31_RS04950 (MPG31_04950) - 1038507..1039403 (+) 897 WP_245014979.1 response regulator -
  MPG31_RS04955 (MPG31_04955) - 1039628..1040494 (+) 867 WP_245015710.1 5'-3' exonuclease -
  MPG31_RS04960 (MPG31_04960) - 1040558..1041808 (-) 1251 WP_245014980.1 outer membrane family protein -
  MPG31_RS04965 (MPG31_04965) - 1041766..1041921 (+) 156 WP_178137808.1 hypothetical protein -
  MPG31_RS04970 (MPG31_04970) - 1041976..1042842 (+) 867 WP_245014981.1 DnaJ C-terminal domain-containing protein -
  MPG31_RS04975 (MPG31_04975) - 1042852..1043223 (+) 372 WP_060758247.1 helix-turn-helix transcriptional regulator -
  MPG31_RS04980 (MPG31_04980) rarA 1043220..1044395 (+) 1176 WP_245014982.1 replication-associated recombination protein A Machinery gene
  MPG31_RS04985 (MPG31_04985) fur 1044554..1045006 (+) 453 WP_000824985.1 ferric iron uptake transcriptional regulator -
  MPG31_RS04990 (MPG31_04990) - 1045026..1045523 (-) 498 WP_245014983.1 DUF2147 domain-containing protein -
  MPG31_RS04995 (MPG31_04995) - 1045520..1046056 (-) 537 WP_245014984.1 YhcH/YjgK/YiaL family protein -
  MPG31_RS05000 (MPG31_05000) fliY 1046084..1046947 (-) 864 WP_245014985.1 flagellar motor switch protein FliY -
  MPG31_RS05005 (MPG31_05005) fliM 1046951..1048015 (-) 1065 WP_033123133.1 flagellar motor switch protein FliM -
  MPG31_RS05010 (MPG31_05010) - 1048008..1048760 (-) 753 WP_245014986.1 RNA polymerase sigma factor FliA -
  MPG31_RS05015 (MPG31_05015) - 1048761..1049075 (-) 315 WP_000868000.1 hypothetical protein -

Sequence

Protein


Download         Length: 391 a.a.        Molecular weight: 43909.46 Da        Isoelectric Point: 7.8110

>NTDB_id=574114 MPG31_RS04980 WP_245014982.1 1043220..1044395(+) (rarA) [Helicobacter pylori strain Hpfe103]
MSLTSLLNPKSLEDFLGQEHLIGKDAPLFKALQSKHFPHAFFYGPPGVGKTSLAQIIARMLERPILLFNATDFKLEDLRL
KLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIMEKDHALILGASTQDPNYSLSHAIRSRSFIFELTPLNKSDLDKLCTK
ALTLLKKQIEPSAKTYLLNNSAGDARALLNLLDLSAKIEDPITLETLQSLRPHSPNDGSYSDDTHYNLTSALIKSLRGSD
ENASIYYLARLIAGGENPEFIARRLVVFASEDIGNANPNALNLASSCLFSVKQIGYPEARIILSQCVIYLACSPKSNTAY
RAINQALDYIQKGSLYPIPKHLLPNAKDYLYPHDYNGYVKQDYLEKPLDLVSSQGIGFEKTLLEWLDKIRN

Nucleotide


Download         Length: 1176 bp        

>NTDB_id=574114 MPG31_RS04980 WP_245014982.1 1043220..1044395(+) (rarA) [Helicobacter pylori strain Hpfe103]
ATGAGCCTGACTTCGCTTTTAAACCCAAAAAGCCTAGAAGATTTTTTAGGCCAAGAGCATCTAATAGGCAAAGACGCCCC
CTTATTTAAAGCCCTACAATCCAAACACTTCCCCCACGCCTTTTTCTATGGCCCTCCTGGCGTGGGTAAAACAAGCCTGG
CTCAAATCATCGCCCGCATGCTAGAGCGCCCCATTCTTTTATTCAATGCGACAGATTTCAAATTAGAGGATTTACGCCTT
AAACTTAAAAATTACCAAAACACCCTTTTAAAACCGGTTGTTTTTATTGATGAAACCCACAGATTGAATAAAACCCAACA
AGAATTTTTACTCCCCATTATGGAAAAAGATCACGCTTTAATCTTAGGGGCTAGCACGCAAGATCCTAATTACAGCCTAA
GCCATGCGATCCGCTCAAGAAGTTTTATTTTTGAATTAACCCCCCTAAACAAGAGCGATTTAGACAAGCTTTGCACTAAA
GCTTTAACATTGCTCAAAAAACAAATAGAGCCTAGCGCTAAAACCTATCTTTTAAACAACAGCGCTGGCGATGCCAGAGC
GTTATTAAACCTTTTAGATTTGAGCGCTAAAATAGAAGATCCTATCACTTTAGAAACGCTGCAATCCTTACGGCCTCATA
GCCCAAATGACGGATCTTATAGCGATGATACGCATTATAATCTCACTAGCGCTTTAATCAAGTCTTTAAGGGGGAGCGAT
GAAAACGCTTCCATCTATTATCTGGCGCGCTTGATTGCTGGCGGGGAAAACCCGGAATTTATCGCCAGAAGGTTGGTGGT
TTTTGCGAGCGAAGATATTGGTAACGCTAACCCAAACGCCCTAAATTTAGCCTCTTCTTGCTTGTTTTCAGTCAAACAAA
TCGGCTACCCTGAAGCGCGCATCATTTTAAGCCAATGCGTGATTTATCTGGCTTGTTCGCCCAAGTCTAACACGGCTTAT
AGAGCGATCAATCAGGCTTTGGATTATATTCAAAAAGGCTCACTCTACCCCATTCCTAAACACCTGCTGCCTAACGCTAA
AGACTACCTTTACCCGCATGATTATAACGGCTATGTCAAACAAGATTATTTGGAAAAACCCCTAGATTTGGTTTCTTCTC
AAGGCATAGGGTTTGAAAAAACCCTTTTAGAATGGCTTGATAAGATAAGAAATTGA

Domains

Predicted by InterProScan.

MgsA AAA+ ATPase C terminal (MgsA_C)

(238-389)

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(7-117)

AAA C-terminal domain (AAA_assoc_2)

(168-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

37.379

100

0.394