Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   MPG62_RS05105 Genome accession   NZ_CP094071
Coordinates   1079663..1080838 (+) Length   391 a.a.
NCBI ID   WP_245098588.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe106     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1074663..1085838
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG62_RS05080 (MPG62_05080) - 1074924..1075820 (+) 897 WP_245098579.1 response regulator -
  MPG62_RS05085 (MPG62_05085) - 1076045..1076911 (+) 867 WP_245100117.1 5'-3' exonuclease -
  MPG62_RS05090 (MPG62_05090) - 1077001..1078251 (-) 1251 WP_245098582.1 outer membrane family protein -
  MPG62_RS05095 (MPG62_05095) - 1078419..1079285 (+) 867 WP_245098585.1 DnaJ C-terminal domain-containing protein -
  MPG62_RS05100 (MPG62_05100) - 1079295..1079666 (+) 372 WP_039704360.1 helix-turn-helix transcriptional regulator -
  MPG62_RS05105 (MPG62_05105) rarA 1079663..1080838 (+) 1176 WP_245098588.1 replication-associated recombination protein A Machinery gene
  MPG62_RS05110 (MPG62_05110) fur 1080999..1081451 (+) 453 WP_180406710.1 ferric iron uptake transcriptional regulator -
  MPG62_RS05115 (MPG62_05115) - 1081471..1081968 (-) 498 WP_000780295.1 DUF2147 domain-containing protein -
  MPG62_RS05120 (MPG62_05120) - 1081965..1082501 (-) 537 WP_245098591.1 YhcH/YjgK/YiaL family protein -
  MPG62_RS05125 (MPG62_05125) fliY 1082530..1083393 (-) 864 WP_245098594.1 flagellar motor switch protein FliY -
  MPG62_RS05130 (MPG62_05130) fliM 1083397..1084461 (-) 1065 WP_000763605.1 flagellar motor switch protein FliM -
  MPG62_RS05135 (MPG62_05135) - 1084454..1085230 (-) 777 WP_245098595.1 RNA polymerase sigma factor FliA -
  MPG62_RS05140 (MPG62_05140) - 1085208..1085522 (-) 315 WP_245098597.1 hypothetical protein -

Sequence

Protein


Download         Length: 391 a.a.        Molecular weight: 43936.61 Da        Isoelectric Point: 8.3996

>NTDB_id=574037 MPG62_RS05105 WP_245098588.1 1079663..1080838(+) (rarA) [Helicobacter pylori strain Hpfe106]
MSLTSLLNPKSLEDFLGQEHLIGKDAPLFKALQSKHFPHTFFYGPPGVGKTSLAQIIARMLERPILLFNATDFKLEDLRL
KLKNYQNTLLKPIVFIDETHRLNKTQQEFLLPIMEKDHALILGASTQDPNYSLSHAIRSRSFIFELTPLKKSDLDKLCAK
ALTLLKKQIEPSAKTYLLNNSAGDARALLNLLDLSAKIENPITLETLQSLRPHSLNDGSYSDDTHYNLTSALIKSLRGSD
ENASIYYLARLIAGGENPEFIARRLVVFASEDIGNANPNALNLAASCLFSVKQIGYPEARIILSQCVIYLACSPKSNTAY
RAINQALDYIQKGSLYPIPKHLLPNAKDYLYPHDYNGYVKQDYLEKPLDLVSSQGIGFEKTLLEWLDKIRN

Nucleotide


Download         Length: 1176 bp        

>NTDB_id=574037 MPG62_RS05105 WP_245098588.1 1079663..1080838(+) (rarA) [Helicobacter pylori strain Hpfe106]
ATGAGCCTGACTTCGCTTTTAAACCCAAAAAGCCTAGAAGATTTTTTAGGCCAAGAGCATCTAATAGGCAAAGACGCCCC
CTTATTTAAAGCCCTACAATCCAAACACTTCCCCCATACCTTTTTCTATGGCCCTCCTGGCGTGGGTAAAACAAGCCTGG
CTCAAATCATCGCCCGCATGCTAGAGCGCCCCATTCTTTTATTTAATGCGACGGATTTCAAATTAGAGGATTTACGCCTT
AAGCTTAAAAATTACCAAAACACCCTTTTAAAACCCATTGTTTTTATTGATGAAACCCACAGATTGAATAAAACCCAACA
AGAATTTTTACTCCCCATTATGGAAAAAGATCACGCTTTAATCTTAGGAGCTAGCACGCAAGATCCTAATTACAGTCTAA
GCCATGCGATCCGCTCAAGAAGTTTTATTTTTGAATTGACCCCCCTAAAAAAGAGCGATTTAGACAAGCTTTGTGCTAAA
GCTTTAACTTTGCTCAAAAAACAAATAGAGCCTAGTGCTAAAACCTATCTTTTAAACAACAGTGCTGGCGATGCTAGAGC
GTTATTAAACCTTTTAGATTTGAGCGCTAAAATAGAAAATCCTATCACTTTAGAAACGCTGCAATCCTTACGGCCTCATA
GCCTAAATGACGGATCTTATAGCGATGATACGCATTATAATCTTACTAGCGCTCTAATCAAGTCTTTAAGAGGGAGCGAT
GAAAACGCTTCCATCTATTATCTGGCACGCTTGATTGCTGGTGGGGAAAACCCGGAATTTATCGCCAGAAGGCTGGTGGT
TTTTGCGAGCGAAGATATTGGTAACGCTAACCCAAACGCCCTTAATTTAGCCGCTTCTTGCTTGTTTTCAGTCAAACAAA
TCGGCTACCCTGAAGCGCGCATCATTTTAAGCCAATGTGTGATTTATCTGGCTTGTTCGCCCAAGTCTAACACGGCTTAT
AGAGCGATCAATCAGGCTTTGGATTATATTCAAAAAGGCTCACTCTACCCCATTCCTAAACACCTGCTGCCTAACGCTAA
AGACTACCTTTACCCGCATGATTATAACGGCTATGTCAAACAAGATTATTTGGAAAAACCCCTAGATTTGGTTTCTTCTC
AAGGCATAGGGTTTGAAAAAACCCTTTTAGAATGGCTTGATAAGATAAGGAATTGA

Domains

Predicted by InterProScan.

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(7-117)

MgsA AAA+ ATPase C terminal (MgsA_C)

(238-389)

AAA C-terminal domain (AAA_assoc_2)

(168-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

37.621

100

0.396