Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB3   Type   Machinery gene
Locus tag   MPG62_RS01795 Genome accession   NZ_CP094071
Coordinates   364916..365176 (-) Length   86 a.a.
NCBI ID   WP_000602756.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe106     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 359916..370176
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG62_RS01785 (MPG62_01785) - 360481..362412 (-) 1932 WP_245100083.1 type IA DNA topoisomerase -
  MPG62_RS01790 (MPG62_01790) - 362405..364903 (-) 2499 WP_245099626.1 VirB4 family type IV secretion system protein -
  MPG62_RS01795 (MPG62_01795) comB3 364916..365176 (-) 261 WP_000602756.1 hypothetical protein Machinery gene
  MPG62_RS01800 (MPG62_01800) - 365177..365479 (-) 303 WP_120887180.1 TrbC/VirB2 family protein -
  MPG62_RS01805 (MPG62_01805) - 365469..367386 (-) 1918 Protein_351 toprim domain-containing protein -
  MPG62_RS01810 (MPG62_01810) - 367397..368161 (-) 765 WP_220977553.1 hypothetical protein -
  MPG62_RS01815 (MPG62_01815) - 368262..368795 (-) 534 WP_245099628.1 Fic/DOC family protein -
  MPG62_RS01820 (MPG62_01820) proC 368801..369595 (-) 795 WP_245099629.1 pyrroline-5-carboxylate reductase -

Sequence

Protein


Download         Length: 86 a.a.        Molecular weight: 10154.04 Da        Isoelectric Point: 4.6082

>NTDB_id=574025 MPG62_RS01795 WP_000602756.1 364916..365176(-) (comB3) [Helicobacter pylori strain Hpfe106]
MILNYVETINVREISKKEKFLKLNMNSWIISFLSASFLFVWSLLYGVVLLVALITMFYILEFFDEDITNIILANLTLKND
TKEYYA

Nucleotide


Download         Length: 261 bp        

>NTDB_id=574025 MPG62_RS01795 WP_000602756.1 364916..365176(-) (comB3) [Helicobacter pylori strain Hpfe106]
ATGATTTTAAATTATGTAGAGACCATCAATGTTAGAGAAATATCTAAAAAAGAGAAGTTTTTAAAGCTTAATATGAATAG
TTGGATCATTTCTTTTTTGAGCGCTTCTTTCTTATTTGTGTGGTCTCTATTATATGGCGTGGTGCTATTGGTGGCATTAA
TAACAATGTTTTACATACTAGAATTTTTTGATGAAGATATTACAAACATTATTTTGGCAAACCTAACGCTAAAAAATGAC
ACTAAAGAATATTATGCTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB3 Helicobacter pylori 26695

44.828

100

0.453