Detailed information    

insolico Bioinformatically predicted

Overview

Name   proC   Type   Machinery gene
Locus tag   HPATCC43504_RS03160 Genome accession   NZ_AP017632
Coordinates   643070..643843 (-) Length   257 a.a.
NCBI ID   WP_108169814.1    Uniprot ID   -
Organism   Helicobacter pylori strain ATCC 43504     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 638070..648843
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPATCC43504_RS03125 (HPPMSS1_RS03295) - 638329..639488 (+) 1160 Protein_616 HP1165 family MFS efflux transporter -
  HPATCC43504_RS03130 (HPATCC43504_00632) - 639495..640466 (-) 972 WP_108169811.1 NAD(P)/FAD-dependent oxidoreductase -
  HPATCC43504_RS03135 (HPATCC43504_00633) ccoS 640492..640683 (-) 192 WP_001090949.1 cbb3-type cytochrome oxidase assembly protein CcoS -
  HPATCC43504_RS03140 (HPATCC43504_00634) - 640808..641389 (+) 582 WP_108169812.1 DedA family protein -
  HPATCC43504_RS03145 (HPATCC43504_00635) - 641481..641975 (+) 495 WP_079359301.1 flavodoxin -
  HPATCC43504_RS03150 (HPATCC43504_00636) ybeY 642031..642453 (+) 423 WP_108169813.1 rRNA maturation RNase YbeY -
  HPATCC43504_RS03155 (HPATCC43504_00637) - 642513..643046 (-) 534 WP_000549892.1 protein adenylyltransferase Fic -
  HPATCC43504_RS03160 (HPATCC43504_00638) proC 643070..643843 (-) 774 WP_108169814.1 pyrroline-5-carboxylate reductase Machinery gene
  HPATCC43504_RS03165 (HPATCC43504_00639) hopL 643856..647509 (-) 3654 WP_108169815.1 Hop family outer membrane protein HopL -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28250.01 Da        Isoelectric Point: 9.1275

>NTDB_id=57401 HPATCC43504_RS03160 WP_108169814.1 643070..643843(-) (proC) [Helicobacter pylori strain ATCC 43504]
MEILQFIGYGNMAQAILEGAHETLSRRFILEITGRNPEKIAPFLQEKNIQAQIVPYKDAIDIHQKFVFLLFKPYNLKDFN
YQGQAKSVLSALAGVNFEALSDAINSLHYLKCMPNIASKFALSSTAVCEKSPMPLISQKALSIIESFGNCVRVGNEEQVD
SSVATNGSALAFLSLVASSLKDAGIREGLNAKDSLELVKMSFKGFAKLLEKERPEMIIEQICTPKGATIEGLSVLEKKGV
RGAFIKACQKSVKKMRL

Nucleotide


Download         Length: 774 bp        

>NTDB_id=57401 HPATCC43504_RS03160 WP_108169814.1 643070..643843(-) (proC) [Helicobacter pylori strain ATCC 43504]
ATGGAAATCTTACAATTCATTGGCTATGGGAATATGGCTCAAGCGATTTTAGAAGGCGCTCATGAAACTTTATCCAGGCG
TTTCATTTTAGAGATCACCGGGCGAAACCCTGAAAAAATCGCCCCTTTTTTACAAGAAAAAAACATTCAAGCTCAAATCG
TGCCTTACAAAGACGCTATTGATATACACCAAAAATTCGTGTTTTTATTGTTTAAGCCTTATAACCTTAAGGATTTTAAT
TATCAAGGGCAAGCTAAAAGCGTTTTGAGCGCTTTAGCCGGGGTAAATTTTGAAGCTTTAAGTGATGCGATTAATTCTTT
ACATTACTTAAAATGCATGCCCAATATCGCGAGCAAGTTCGCCCTCTCTTCTACGGCGGTGTGTGAAAAATCGCCCATGC
CCTTAATAAGCCAAAAGGCTTTGAGTATTATTGAGAGTTTTGGGAATTGCGTGCGAGTGGGCAATGAAGAGCAGGTTGAT
TCTAGCGTGGCGACAAACGGGAGCGCACTCGCGTTTTTGAGCTTGGTAGCGAGCAGTTTGAAAGATGCCGGTATTAGAGA
GGGCTTGAACGCTAAAGATTCTTTAGAATTGGTAAAAATGAGTTTTAAAGGCTTTGCCAAGCTGTTAGAAAAAGAACGCC
CTGAGATGATTATAGAGCAAATTTGCACCCCTAAAGGCGCAACGATTGAAGGCTTGAGCGTTTTAGAAAAAAAGGGAGTT
AGGGGAGCGTTTATCAAAGCTTGCCAAAAGAGCGTGAAAAAAATGCGTCTCTAA

Domains

Predicted by InterProScan.

NADP oxidoreductase coenzyme F420-dependent (F420_oxidored)

(4-94)

Pyrroline-5-carboxylate reductase dimerisation (P5CR_dimer)

(156-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  proC Campylobacter jejuni subsp. jejuni 81-176

37.008

98.833

0.366

Multiple sequence alignment