Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB3   Type   Machinery gene
Locus tag   HPATCC43504_RS01910 Genome accession   NZ_AP017632
Coordinates   404607..404873 (+) Length   88 a.a.
NCBI ID   WP_001173702.1    Uniprot ID   O25190
Organism   Helicobacter pylori strain ATCC 43504     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 399607..409873
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPATCC43504_RS01885 (HPPMSS1_RS02005) - 400104..401640 (-) 1537 Protein_371 DUF262 domain-containing protein -
  HPATCC43504_RS01890 (HPATCC43504_00385) - 401685..402464 (+) 780 WP_108169666.1 hypothetical protein -
  HPATCC43504_RS01895 (HPATCC43504_00386) - 402484..402777 (+) 294 WP_108169667.1 hypothetical protein -
  HPATCC43504_RS01900 (HPATCC43504_00387) - 402784..404307 (+) 1524 WP_108169668.1 hypothetical protein -
  HPATCC43504_RS01905 (HPATCC43504_00388) - 404304..404606 (+) 303 WP_108169669.1 virB2 type IV secretion protein -
  HPATCC43504_RS01910 (HPATCC43504_00389) comB3 404607..404873 (+) 267 WP_001173702.1 hypothetical protein Machinery gene
  HPATCC43504_RS01915 (HPATCC43504_00390) comB4 404920..407289 (+) 2370 WP_253809749.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  HPATCC43504_RS01920 (HPATCC43504_00391) - 407292..409325 (+) 2034 WP_108169671.1 type IA DNA topoisomerase -

Sequence

Protein


Download         Length: 88 a.a.        Molecular weight: 10177.01 Da        Isoelectric Point: 4.8782

>NTDB_id=57397 HPATCC43504_RS01910 WP_001173702.1 404607..404873(+) (comB3) [Helicobacter pylori strain ATCC 43504]
MALHIVCVESINIREISKRETFLGLNLDSWIVSFLMSAWLLSFQPLYAMGLMASCVFIFYILEFFDEDITAILHALFTLR
TGARNYYA

Nucleotide


Download         Length: 267 bp        

>NTDB_id=57397 HPATCC43504_RS01910 WP_001173702.1 404607..404873(+) (comB3) [Helicobacter pylori strain ATCC 43504]
ATGGCATTGCATATTGTTTGTGTTGAAAGTATCAACATTAGAGAAATCAGCAAAAGAGAAACTTTTTTGGGATTAAACTT
GGATAGTTGGATTGTTAGTTTCTTAATGTCGGCATGGTTACTTTCATTCCAACCACTTTATGCTATGGGTTTAATGGCTA
GTTGTGTGTTTATATTCTACATTTTAGAATTTTTTGATGAAGATATAACAGCCATTTTGCATGCGCTTTTCACATTAAGA
ACAGGAGCTAGAAATTATTATGCTTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB O25190

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB3 Helicobacter pylori 26695

42.169

94.318

0.398

Multiple sequence alignment