Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB3   Type   Machinery gene
Locus tag   MPF94_RS07545 Genome accession   NZ_CP094065
Coordinates   1556063..1556329 (+) Length   88 a.a.
NCBI ID   WP_245022084.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe112     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1551063..1561329
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPF94_RS07505 (MPF94_07505) - 1551243..1552034 (+) 792 Protein_1469 hypothetical protein -
  MPF94_RS07510 (MPF94_07510) - 1552054..1552344 (+) 291 WP_245022078.1 hypothetical protein -
  MPF94_RS07515 (MPF94_07515) - 1552341..1553624 (-) 1284 WP_245022079.1 transposase -
  MPF94_RS07520 (MPF94_07520) tnpA 1553675..1554121 (+) 447 WP_245022080.1 IS200/IS605 family transposase -
  MPF94_RS07995 - 1554239..1555763 (+) 1525 Protein_1473 hypothetical protein -
  MPF94_RS07540 (MPF94_07540) - 1555760..1556062 (+) 303 WP_342368801.1 virB2 type IV secretion protein -
  MPF94_RS07545 (MPF94_07545) comB3 1556063..1556329 (+) 267 WP_245022084.1 virB3 type IV secretion protein Machinery gene
  MPF94_RS07555 (MPF94_07555) - 1556376..1558743 (+) 2368 Protein_1476 VirB4 family type IV secretion/conjugal transfer ATPase -
  MPF94_RS07565 (MPF94_07565) - 1558746..1560355 (+) 1610 Protein_1477 type IA DNA topoisomerase -
  MPF94_RS07570 (MPF94_07570) - 1560318..1560504 (-) 187 Protein_1478 DUF1104 domain-containing protein -

Sequence

Protein


Download         Length: 88 a.a.        Molecular weight: 10164.91 Da        Isoelectric Point: 4.5812

>NTDB_id=573886 MPF94_RS07545 WP_245022084.1 1556063..1556329(+) (comB3) [Helicobacter pylori strain Hpfe112]
MALHIACVESINIREISKRETFLGLNLDSWVVSFLMSAWLLSFQPLYAMGLMDSCVFVFYILEFFDEDITAILHALFTLR
TGARNYYA

Nucleotide


Download         Length: 267 bp        

>NTDB_id=573886 MPF94_RS07545 WP_245022084.1 1556063..1556329(+) (comB3) [Helicobacter pylori strain Hpfe112]
ATGGCATTGCATATTGCTTGTGTTGAAAGTATCAACATTAGAGAAATCAGCAAAAGAGAAACTTTTTTGGGATTAAACTT
GGATAGTTGGGTTGTTAGTTTCTTAATGTCGGCATGGTTACTTTCATTCCAACCACTTTATGCTATGGGTTTAATGGATA
GTTGTGTGTTTGTATTCTACATTTTAGAATTTTTTGATGAAGATATAACAGCCATTTTGCATGCGCTTTTCACATTAAGG
ACAGGAGCTAGAAATTATTATGCTTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB3 Helicobacter pylori 26695

40.964

94.318

0.386