Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   MPG37_RS04980 Genome accession   NZ_CP094064
Coordinates   1049159..1050334 (+) Length   391 a.a.
NCBI ID   WP_245050546.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe114     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1044159..1055334
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG37_RS04955 (MPG37_04955) - 1044420..1045316 (+) 897 WP_000697547.1 OriC activity response regulator -
  MPG37_RS04960 (MPG37_04960) - 1045541..1046407 (+) 867 WP_220830487.1 5'-3' exonuclease -
  MPG37_RS04965 (MPG37_04965) - 1046497..1047747 (-) 1251 WP_245050542.1 outer membrane family protein -
  MPG37_RS04970 (MPG37_04970) - 1047915..1048781 (+) 867 WP_245050544.1 DnaJ C-terminal domain-containing protein -
  MPG37_RS04975 (MPG37_04975) - 1048791..1049162 (+) 372 WP_000332994.1 helix-turn-helix transcriptional regulator -
  MPG37_RS04980 (MPG37_04980) rarA 1049159..1050334 (+) 1176 WP_245050546.1 replication-associated recombination protein A Machinery gene
  MPG37_RS04985 (MPG37_04985) fur 1050495..1050944 (+) 450 WP_000824991.1 ferric iron uptake transcriptional regulator -
  MPG37_RS04990 (MPG37_04990) - 1050952..1051449 (-) 498 WP_245050547.1 DUF2147 domain-containing protein -
  MPG37_RS04995 (MPG37_04995) - 1051446..1051982 (-) 537 WP_245050548.1 YhcH/YjgK/YiaL family protein -
  MPG37_RS05000 (MPG37_05000) fliY 1052011..1052874 (-) 864 WP_245050550.1 flagellar motor switch protein FliY -
  MPG37_RS05005 (MPG37_05005) fliM 1052878..1053942 (-) 1065 WP_000763605.1 flagellar motor switch protein FliM -
  MPG37_RS05010 (MPG37_05010) - 1053935..1054711 (-) 777 WP_000602378.1 RNA polymerase sigma factor FliA -
  MPG37_RS05015 (MPG37_05015) - 1054689..1055003 (-) 315 WP_000867999.1 hypothetical protein -

Sequence

Protein


Download         Length: 391 a.a.        Molecular weight: 43999.58 Da        Isoelectric Point: 7.8110

>NTDB_id=573832 MPG37_RS04980 WP_245050546.1 1049159..1050334(+) (rarA) [Helicobacter pylori strain Hpfe114]
MSLTSLLNPKSLEDFLGQEHLIGKDAPLFKALQSKHFPHTFFYGPPGVGKTSLAQIIARMLERPILLFNATDFKLEDLRL
KFKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIMEKDHALILGASTQDPNYSLSHAIRSRSFIFELTPLNKSDLDKLCTK
ALTLLKKQIEPSAKTYLLNNSAGDARALLNLLDLSTKIEDPITLETLQSLRPHSLNDGSYSDDTHYNLTSALIKSLRGSD
ENASIYYLARLIAGGENPEFIARRLVVFASEDIGNANPNALNLATSCLLSVKQIGYPEARIILSQCVIYLACSPKSNTAY
RAINQALDYIQKGSLYPIPKHLLPNAKDYLYPHDYNGYVKQDYLEKPLDLVSSQGIGFEKTLLEWLDKIRN

Nucleotide


Download         Length: 1176 bp        

>NTDB_id=573832 MPG37_RS04980 WP_245050546.1 1049159..1050334(+) (rarA) [Helicobacter pylori strain Hpfe114]
ATGAGCCTGACTTCGCTTTTAAACCCAAAAAGCCTAGAAGATTTTTTAGGCCAAGAGCATCTAATAGGCAAAGACGCCCC
CTTATTTAAAGCCCTACAATCCAAACACTTCCCCCATACCTTTTTCTATGGCCCTCCTGGCGTGGGTAAAACAAGCCTGG
CTCAAATCATCGCCCGCATGCTAGAGCGCCCCATTCTTTTATTCAATGCGACGGATTTCAAATTAGAGGATTTACGCCTT
AAATTTAAAAATTACCAAAACACCCTTTTAAAACCGGTTGTTTTTATTGATGAAACCCACAGATTGAATAAAACCCAACA
AGAATTTTTACTCCCCATTATGGAAAAAGATCACGCTTTAATCTTAGGGGCTAGCACGCAAGATCCTAATTACAGCCTAA
GCCATGCGATCCGCTCAAGAAGTTTTATTTTTGAATTAACCCCCCTAAACAAGAGCGATTTAGACAAGCTTTGCACTAAA
GCTTTAACATTACTCAAAAAACAAATAGAGCCTAGCGCTAAAACCTATCTTTTAAACAACAGCGCTGGCGATGCTAGAGC
GTTATTAAACCTTTTAGATTTGAGCACTAAGATAGAAGATCCTATCACTTTAGAAACGCTGCAATCCTTACGGCCTCATA
GCCTAAATGACGGATCTTATAGCGATGATACGCATTATAATCTTACTAGCGCTCTAATCAAGTCTTTAAGAGGGAGCGAT
GAAAACGCTTCCATCTATTATCTAGCGCGCTTGATTGCTGGCGGAGAAAACCCGGAATTTATCGCCAGAAGGTTGGTGGT
TTTTGCGAGCGAAGATATTGGTAACGCTAACCCAAACGCCCTTAATTTAGCCACTTCTTGCTTGCTTTCAGTCAAACAAA
TCGGCTACCCTGAAGCGCGCATCATTTTAAGCCAATGCGTGATTTATCTGGCTTGCTCGCCCAAGTCTAACACGGCTTAT
AGAGCGATCAATCAGGCTTTGGATTATATTCAAAAAGGCTCACTCTACCCCATTCCTAAACACCTGCTGCCTAACGCTAA
AGACTACCTTTACCCACATGATTATAACGGCTATGTCAAACAAGATTATTTGGAAAAACCCCTAGATTTGGTTTCTTCTC
AAGGCATAGGGTTTGAAAAAACCCTTTTAGAATGGCTTGATAAGATAAGAAATTGA

Domains

Predicted by InterProScan.

MgsA AAA+ ATPase C terminal (MgsA_C)

(238-389)

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(7-117)

AAA C-terminal domain (AAA_assoc_2)

(168-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

37.136

100

0.391