Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB3   Type   Machinery gene
Locus tag   MPG68_RS06725 Genome accession   NZ_CP094063
Coordinates   1390515..1390781 (-) Length   88 a.a.
NCBI ID   WP_064431320.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe115     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1385515..1395781
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG68_RS06705 (MPG68_06705) - 1386317..1386499 (+) 183 Protein_1306 DUF1104 domain-containing protein -
  MPG68_RS07930 (MPG68_06710) - 1386468..1388097 (-) 1630 Protein_1307 type IA DNA topoisomerase -
  MPG68_RS06720 (MPG68_06720) - 1388100..1390468 (-) 2369 Protein_1308 VirB4 family type IV secretion/conjugal transfer ATPase -
  MPG68_RS06725 (MPG68_06725) comB3 1390515..1390781 (-) 267 WP_064431320.1 hypothetical protein Machinery gene
  MPG68_RS07935 - 1390782..1391091 (-) 310 Protein_1310 virB2 type IV secretion protein -
  MPG68_RS06740 (MPG68_06740) - 1391088..1392611 (-) 1524 Protein_1311 hypothetical protein -
  MPG68_RS06745 (MPG68_06745) - 1392618..1392911 (-) 294 WP_154403551.1 hypothetical protein -
  MPG68_RS06750 (MPG68_06750) - 1392931..1393709 (-) 779 Protein_1313 hypothetical protein -

Sequence

Protein


Download         Length: 88 a.a.        Molecular weight: 10191.03 Da        Isoelectric Point: 4.8782

>NTDB_id=573801 MPG68_RS06725 WP_064431320.1 1390515..1390781(-) (comB3) [Helicobacter pylori strain Hpfe115]
MALHIVCVESINIREISKRETFLGLNLDSWIVSFLMSAWLLSFQPLYAMGLMASCVFVFYILEFFDEDITAILHVLFTLR
TGARNYYA

Nucleotide


Download         Length: 267 bp        

>NTDB_id=573801 MPG68_RS06725 WP_064431320.1 1390515..1390781(-) (comB3) [Helicobacter pylori strain Hpfe115]
ATGGCATTGCATATTGTTTGTGTTGAAAGTATCAACATTAGAGAAATCAGCAAAAGAGAAACTTTTTTGGGATTAAACTT
GGATAGTTGGATTGTTAGTTTCTTAATGTCGGCATGGTTACTTTCATTCCAACCACTTTATGCTATGGGTTTAATGGCTA
GTTGTGTGTTTGTATTCTATATTTTAGAATTTTTTGATGAAGATATAACAGCCATTTTGCATGTGCTTTTCACATTAAGG
ACAGGAGCTAGAAATTATTATGCTTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB3 Helicobacter pylori 26695

40.964

94.318

0.386