Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   MPG68_RS05040 Genome accession   NZ_CP094063
Coordinates   1048935..1050110 (+) Length   391 a.a.
NCBI ID   WP_245026153.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe115     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1043935..1055110
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG68_RS05015 (MPG68_05015) - 1044221..1045117 (+) 897 WP_000697544.1 OriC activity response regulator -
  MPG68_RS05020 (MPG68_05020) - 1045342..1046208 (+) 867 WP_245027542.1 5'-3' exonuclease -
  MPG68_RS05025 (MPG68_05025) - 1046273..1047523 (-) 1251 WP_245026151.1 outer membrane family protein -
  MPG68_RS05030 (MPG68_05030) - 1047691..1048557 (+) 867 WP_245026152.1 DnaJ C-terminal domain-containing protein -
  MPG68_RS05035 (MPG68_05035) - 1048567..1048938 (+) 372 WP_000333004.1 helix-turn-helix transcriptional regulator -
  MPG68_RS05040 (MPG68_05040) rarA 1048935..1050110 (+) 1176 WP_245026153.1 replication-associated recombination protein A Machinery gene
  MPG68_RS05045 (MPG68_05045) fur 1050272..1050724 (+) 453 WP_000824992.1 ferric iron uptake transcriptional regulator -
  MPG68_RS05050 (MPG68_05050) - 1050744..1051241 (-) 498 WP_000780291.1 DUF2147 domain-containing protein -
  MPG68_RS05055 (MPG68_05055) - 1051238..1051774 (-) 537 WP_245026154.1 YhcH/YjgK/YiaL family protein -
  MPG68_RS05060 (MPG68_05060) fliY 1051803..1052666 (-) 864 WP_245026155.1 flagellar motor switch protein FliY -
  MPG68_RS05065 (MPG68_05065) fliM 1052670..1053734 (-) 1065 WP_245026156.1 flagellar motor switch protein FliM -
  MPG68_RS05070 (MPG68_05070) - 1053727..1054521 (-) 795 WP_245026157.1 RNA polymerase sigma factor FliA -
  MPG68_RS05075 (MPG68_05075) - 1054499..1054813 (-) 315 WP_000867999.1 hypothetical protein -

Sequence

Protein


Download         Length: 391 a.a.        Molecular weight: 43752.36 Da        Isoelectric Point: 7.4528

>NTDB_id=573789 MPG68_RS05040 WP_245026153.1 1048935..1050110(+) (rarA) [Helicobacter pylori strain Hpfe115]
MSLTSLLNPKSLEDFLGQEHLIGKDAPLFKALQSKHFPHAFFYGPPGVGKTSLAQIIARMLERPILLFNATDFKLEDLRL
KLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIMEKDHALILGASTQDPNYSLSHAIRSRSFIFELTPLNKSDLDKLCAK
ALTLLKKQIEPSAKTYLLNNSAGDARALLNLLDLSAKIEDPITLETLQSLRPHSLNDGSYSDDTHYNLTSALIKSLRGSD
ENASIYYLACLIAGGENPEFIARRLVVFASEDIGNANPNALNLAASCLFSVKQIGYPEARIILSQCVIYLACSPKSNTAY
RAINQALDCVQKGSLYPIPKHLLPNAKDYLYPHDYNGYVKQDYLEKPLDLVSSQGIGFEKTLLEWLDKIRN

Nucleotide


Download         Length: 1176 bp        

>NTDB_id=573789 MPG68_RS05040 WP_245026153.1 1048935..1050110(+) (rarA) [Helicobacter pylori strain Hpfe115]
ATGAGCCTGACTTCGCTTTTAAACCCAAAAAGCCTAGAAGATTTTTTAGGCCAAGAGCATCTAATAGGCAAAGACGCCCC
CTTATTTAAAGCCCTACAATCCAAACACTTCCCCCATGCCTTTTTCTATGGCCCTCCTGGCGTGGGTAAAACAAGCCTGG
CTCAAATCATCGCCCGCATGCTAGAGCGCCCCATTCTTTTATTCAATGCGACGGATTTCAAATTAGAGGATTTACGCCTT
AAGCTTAAAAATTACCAAAACACCCTTTTAAAACCCGTTGTTTTTATTGATGAAACCCACAGATTGAATAAAACCCAACA
AGAATTTTTACTCCCCATTATGGAAAAAGATCACGCTTTAATCTTAGGGGCTAGCACGCAAGATCCTAATTACAGCTTAA
GCCATGCGATCCGCTCAAGAAGTTTTATTTTTGAATTAACCCCCCTAAACAAGAGCGATTTAGACAAGCTTTGCGCTAAA
GCTTTAACATTGCTCAAAAAACAAATAGAGCCTAGCGCTAAAACCTATCTTTTAAACAACAGCGCTGGCGATGCTAGAGC
GTTATTAAACCTTTTAGATTTGAGCGCTAAGATAGAAGATCCTATCACTTTAGAAACGCTGCAATCCTTACGGCCTCATA
GCCTAAATGATGGATCTTATAGCGATGATACGCATTATAATCTTACTAGCGCTCTAATCAAGTCTTTAAGAGGGAGCGAT
GAAAACGCTTCCATCTATTATCTGGCGTGCTTGATTGCTGGCGGGGAAAACCCGGAATTTATCGCCAGAAGGCTGGTGGT
TTTTGCGAGCGAAGATATTGGTAACGCTAACCCAAACGCCCTAAATTTAGCCGCTTCTTGCTTGTTTTCAGTCAAACAAA
TCGGCTACCCTGAAGCGCGCATCATTTTAAGCCAATGCGTGATCTATCTGGCTTGTTCGCCCAAGTCTAACACGGCTTAT
AGAGCGATCAACCAGGCTTTAGATTGCGTTCAAAAAGGCTCACTCTACCCCATTCCTAAACACCTGCTGCCTAATGCTAA
AGACTACCTTTACCCGCATGATTATAACGGCTATGTCAAACAAGATTATTTGGAAAAACCCCTAGATTTGGTTTCTTCTC
AAGGCATAGGGTTTGAAAAAACCCTTTTAGAATGGCTTGATAAGATAAGAAATTGA

Domains

Predicted by InterProScan.

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(7-117)

AAA C-terminal domain (AAA_assoc_2)

(168-237)

MgsA AAA+ ATPase C terminal (MgsA_C)

(238-389)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

36.893

100

0.389