Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   MPG12_RS05185 Genome accession   NZ_CP094062
Coordinates   1101536..1102711 (+) Length   391 a.a.
NCBI ID   WP_245045387.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe118     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1096536..1107711
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG12_RS05160 (MPG12_05160) - 1096823..1097719 (+) 897 WP_245045383.1 OriC activity response regulator -
  MPG12_RS05165 (MPG12_05165) - 1097945..1098811 (+) 867 WP_245046541.1 5'-3' exonuclease -
  MPG12_RS05170 (MPG12_05170) - 1098874..1100124 (-) 1251 WP_245045384.1 outer membrane family protein -
  MPG12_RS05175 (MPG12_05175) - 1100292..1101158 (+) 867 WP_245045385.1 DnaJ C-terminal domain-containing protein -
  MPG12_RS05180 (MPG12_05180) - 1101168..1101539 (+) 372 WP_000332994.1 helix-turn-helix transcriptional regulator -
  MPG12_RS05185 (MPG12_05185) rarA 1101536..1102711 (+) 1176 WP_245045387.1 replication-associated recombination protein A Machinery gene
  MPG12_RS05190 (MPG12_05190) fur 1102871..1103323 (+) 453 WP_245045389.1 ferric iron uptake transcriptional regulator -
  MPG12_RS05195 (MPG12_05195) - 1103343..1103840 (-) 498 WP_245045391.1 DUF2147 domain-containing protein -
  MPG12_RS05200 (MPG12_05200) - 1103837..1104373 (-) 537 WP_180593279.1 YhcH/YjgK/YiaL family protein -
  MPG12_RS05205 (MPG12_05205) fliY 1104401..1105264 (-) 864 WP_245045393.1 flagellar motor switch protein FliY -
  MPG12_RS05210 (MPG12_05210) fliM 1105268..1106332 (-) 1065 WP_000763605.1 flagellar motor switch protein FliM -
  MPG12_RS05215 (MPG12_05215) - 1106325..1107092 (-) 768 WP_245045395.1 RNA polymerase sigma factor FliA -
  MPG12_RS05220 (MPG12_05220) - 1107070..1107384 (-) 315 WP_000868000.1 hypothetical protein -

Sequence

Protein


Download         Length: 391 a.a.        Molecular weight: 43812.48 Da        Isoelectric Point: 7.7610

>NTDB_id=573749 MPG12_RS05185 WP_245045387.1 1101536..1102711(+) (rarA) [Helicobacter pylori strain Hpfe118]
MSLTSLLNPKSLEDFLGQEHLIGKDAPLFKALQSKHFPHAFFYGPPGVGKTSLAQIIACMLERPILLFNATDFKLEDLRL
KLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIMEKDHALILGASTQDPNYSLSHAIRSRSFIFELTPLKKSDLDKLCAK
ALTLLKKQIEPSAKTYLLNNSAGDARALLNLLDLSAKIEDPITLETLQSLRPHSLNDGSYSDDTHYNLTSALIKSLRGSD
ENASIYYLARLIAGGENPEFIARRLVVFASEDIGNANPNALNLAASCLFSVKQIGYPEARIILSQCVIYLACSPKSNTAY
RAINQALDYIQKGSLYPIPKHLLPNAKDYLYPHDYNGYVKQDYLEKPLDLVSSQGIGFEKTLLEWLDKIKN

Nucleotide


Download         Length: 1176 bp        

>NTDB_id=573749 MPG12_RS05185 WP_245045387.1 1101536..1102711(+) (rarA) [Helicobacter pylori strain Hpfe118]
ATGAGCCTGACTTCGCTTTTAAACCCAAAAAGCCTAGAAGATTTTTTAGGCCAAGAGCATCTAATAGGCAAAGACGCCCC
CTTATTTAAAGCCCTACAATCCAAACACTTCCCCCACGCCTTTTTCTATGGCCCTCCTGGCGTGGGAAAAACAAGCCTGG
CTCAAATCATCGCTTGCATGCTAGAGCGCCCCATTCTTTTATTCAATGCGACGGATTTCAAATTAGAGGATTTACGCCTT
AAGCTTAAAAATTACCAAAACACCCTTTTAAAACCGGTTGTTTTTATTGATGAAACCCACAGATTGAATAAAACCCAACA
AGAATTTTTACTCCCCATTATGGAAAAAGATCACGCTTTAATCTTAGGGGCTAGCACGCAAGATCCTAATTACAGCTTAA
GCCATGCAATCCGCTCAAGAAGTTTTATTTTTGAATTAACCCCCCTAAAAAAGAGCGATTTAGACAAGCTTTGCGCTAAA
GCTTTAACATTACTCAAAAAACAAATAGAGCCTAGCGCTAAAACCTATCTTTTAAACAACAGCGCTGGCGATGCTAGAGC
GTTATTAAACCTTTTAGATTTGAGCGCTAAGATAGAAGATCCTATCACTTTAGAAACGCTGCAATCCTTACGGCCTCATA
GCCTAAATGACGGATCTTATAGCGATGATACACATTATAATCTTACTAGCGCTCTAATCAAGTCTTTAAGAGGGAGCGAT
GAAAACGCTTCCATCTATTATCTAGCACGCTTGATTGCTGGCGGGGAAAACCCGGAATTTATCGCCAGAAGGCTGGTGGT
TTTTGCGAGCGAAGATATTGGTAACGCTAACCCAAACGCCCTAAATTTAGCCGCTTCTTGCTTGTTTTCAGTCAAACAAA
TCGGCTACCCTGAAGCGCGCATCATTTTAAGCCAATGCGTGATTTATCTGGCTTGCTCGCCCAAGTCTAACACGGCTTAT
AGAGCGATCAATCAGGCTTTGGATTATATTCAAAAAGGCTCACTCTACCCCATTCCTAAACACCTGCTGCCTAACGCTAA
AGACTACCTTTACCCGCATGATTATAACGGCTATGTCAAACAAGATTATTTGGAAAAACCCCTAGATTTGGTTTCTTCTC
AAGGCATAGGGTTTGAAAAAACCCTTTTAGAATGGCTTGATAAGATAAAGAATTGA

Domains

Predicted by InterProScan.

MgsA AAA+ ATPase C terminal (MgsA_C)

(238-389)

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(7-117)

AAA C-terminal domain (AAA_assoc_2)

(168-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

37.379

100

0.394