Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB2   Type   Machinery gene
Locus tag   MPG12_RS00625 Genome accession   NZ_CP094062
Coordinates   128635..128919 (+) Length   94 a.a.
NCBI ID   WP_000736106.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe118     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 123635..133919
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG12_RS00610 (MPG12_00610) - 126838..126992 (-) 155 Protein_118 IS1595 family transposase -
  MPG12_RS00615 (MPG12_00615) - 127267..128055 (+) 789 WP_245045958.1 integrase -
  MPG12_RS00620 (MPG12_00620) - 128159..128638 (+) 480 WP_231254044.1 hypothetical protein -
  MPG12_RS00625 (MPG12_00625) comB2 128635..128919 (+) 285 WP_000736106.1 TrbC/VirB2 family protein Machinery gene
  MPG12_RS00630 (MPG12_00630) comB3 128930..129193 (+) 264 WP_245045960.1 competence protein ComB Machinery gene
  MPG12_RS00635 (MPG12_00635) - 129204..129440 (+) 237 WP_001183709.1 hypothetical protein -
  MPG12_RS00640 (MPG12_00640) comB4 129440..132016 (+) 2577 WP_245045962.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  MPG12_RS00645 (MPG12_00645) - 132018..132152 (+) 135 WP_041200005.1 hypothetical protein -
  MPG12_RS00650 (MPG12_00650) - 132145..133278 (+) 1134 WP_245045964.1 VirB8/TrbF family protein -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10752.11 Da        Isoelectric Point: 11.1589

>NTDB_id=573726 MPG12_RS00625 WP_000736106.1 128635..128919(+) (comB2) [Helicobacter pylori strain Hpfe118]
MKKLRHFRKLIAFLGFSPLLLQADMTTFFNSIEQQLTSPTAKGILMVIFLGLAIFIWKNLDRWKEILMTVLAIAIGAAIF
FKAPALANWFMSIF

Nucleotide


Download         Length: 285 bp        

>NTDB_id=573726 MPG12_RS00625 WP_000736106.1 128635..128919(+) (comB2) [Helicobacter pylori strain Hpfe118]
ATGAAAAAATTAAGGCATTTTAGAAAGCTCATCGCCTTTTTAGGTTTTTCACCACTTTTACTACAAGCGGATATGACTAC
CTTTTTTAATAGCATTGAACAACAACTCACTAGCCCCACCGCTAAGGGTATTTTGATGGTCATTTTTTTAGGGCTTGCTA
TTTTTATATGGAAAAATTTAGACAGATGGAAAGAAATCTTAATGACAGTCCTTGCTATTGCCATAGGCGCTGCAATCTTT
TTTAAAGCCCCAGCCTTAGCTAATTGGTTTATGAGTATTTTTTAA

Domains

Predicted by InterProScan.

TrbC/VIRB2 pilin (TrbC)

(4-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB2 Helicobacter pylori 26695

57.778

95.745

0.553