Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB3   Type   Machinery gene
Locus tag   MPG58_RS03595 Genome accession   NZ_CP094061
Coordinates   768732..768992 (-) Length   86 a.a.
NCBI ID   WP_000602756.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe120     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 763732..773992
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG58_RS07705 - 764166..764294 (-) 129 WP_001185489.1 hypothetical protein -
  MPG58_RS03585 (MPG58_03585) - 764294..766228 (-) 1935 WP_245012224.1 type IA DNA topoisomerase -
  MPG58_RS03590 (MPG58_03590) - 766221..768719 (-) 2499 Protein_694 VirB4 family type IV secretion system protein -
  MPG58_RS03595 (MPG58_03595) comB3 768732..768992 (-) 261 WP_000602756.1 hypothetical protein Machinery gene
  MPG58_RS03600 (MPG58_03600) - 768993..769295 (-) 303 WP_245012187.1 TrbC/VirB2 family protein -
  MPG58_RS03605 (MPG58_03605) - 769285..771202 (-) 1918 Protein_697 toprim domain-containing protein -
  MPG58_RS03610 (MPG58_03610) - 771212..771976 (-) 765 WP_245012188.1 hypothetical protein -
  MPG58_RS03615 (MPG58_03615) - 772084..772647 (+) 564 WP_245012189.1 glycosyltransferase family 25 protein -
  MPG58_RS03620 (MPG58_03620) - 772592..773416 (+) 825 WP_245012190.1 glycosyltransferase family 25 protein -

Sequence

Protein


Download         Length: 86 a.a.        Molecular weight: 10154.04 Da        Isoelectric Point: 4.6082

>NTDB_id=573695 MPG58_RS03595 WP_000602756.1 768732..768992(-) (comB3) [Helicobacter pylori strain Hpfe120]
MILNYVETINVREISKKEKFLKLNMNSWIISFLSASFLFVWSLLYGVVLLVALITMFYILEFFDEDITNIILANLTLKND
TKEYYA

Nucleotide


Download         Length: 261 bp        

>NTDB_id=573695 MPG58_RS03595 WP_000602756.1 768732..768992(-) (comB3) [Helicobacter pylori strain Hpfe120]
ATGATTTTAAATTATGTAGAGACCATCAATGTTAGAGAAATATCTAAAAAAGAGAAGTTTTTAAAGCTTAATATGAATAG
TTGGATCATTTCTTTTTTGAGCGCTTCTTTCTTATTTGTGTGGTCTTTATTATATGGCGTGGTGCTATTGGTGGCATTAA
TAACAATGTTTTACATACTAGAATTTTTTGATGAAGATATTACAAACATTATTTTGGCAAACCTAACGCTAAAAAATGAC
ACTAAAGAATATTATGCTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB3 Helicobacter pylori 26695

44.828

100

0.453