Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   MPG39_RS04975 Genome accession   NZ_CP094059
Coordinates   1047580..1048755 (+) Length   391 a.a.
NCBI ID   WP_245079907.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe122     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1042580..1053755
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG39_RS04950 (MPG39_04950) - 1042841..1043737 (+) 897 WP_180412190.1 OriC activity response regulator -
  MPG39_RS04955 (MPG39_04955) - 1043962..1044828 (+) 867 WP_245081309.1 5'-3' exonuclease -
  MPG39_RS04960 (MPG39_04960) - 1044918..1046168 (-) 1251 WP_245079905.1 outer membrane family protein -
  MPG39_RS04965 (MPG39_04965) - 1046336..1047202 (+) 867 WP_024773755.1 DnaJ family protein -
  MPG39_RS04970 (MPG39_04970) - 1047212..1047583 (+) 372 WP_000333004.1 helix-turn-helix transcriptional regulator -
  MPG39_RS04975 (MPG39_04975) rarA 1047580..1048755 (+) 1176 WP_245079907.1 replication-associated recombination protein A Machinery gene
  MPG39_RS04980 (MPG39_04980) fur 1048914..1049363 (+) 450 WP_000824991.1 ferric iron uptake transcriptional regulator -
  MPG39_RS04985 (MPG39_04985) - 1049371..1049868 (-) 498 WP_245079909.1 DUF2147 domain-containing protein -
  MPG39_RS04990 (MPG39_04990) - 1049865..1050401 (-) 537 WP_245079911.1 YhcH/YjgK/YiaL family protein -
  MPG39_RS04995 (MPG39_04995) fliY 1050430..1051293 (-) 864 WP_245079914.1 flagellar motor switch protein FliY -
  MPG39_RS05000 (MPG39_05000) fliM 1051297..1052361 (-) 1065 WP_120800363.1 flagellar motor switch protein FliM -
  MPG39_RS05005 (MPG39_05005) - 1052354..1053130 (-) 777 WP_140543378.1 RNA polymerase sigma factor FliA -
  MPG39_RS05010 (MPG39_05010) - 1053108..1053422 (-) 315 WP_000868000.1 hypothetical protein -

Sequence

Protein


Download         Length: 391 a.a.        Molecular weight: 43895.52 Da        Isoelectric Point: 8.3996

>NTDB_id=573663 MPG39_RS04975 WP_245079907.1 1047580..1048755(+) (rarA) [Helicobacter pylori strain Hpfe122]
MSLTSLLNPKSLEDFLGQKHLVGKDAPLFKALQSKHFPHAFFYGPPGVGKTSLAQIIARMLERPILLFNATDFKLEDLRL
KLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIMEKDHALILGASTQDPNYSLSHAIRSRSFIFELTPLNKSDLDKLCTK
ALTLLKKQIEPSAKTYLLNSSTGDARALLNLLDLSAKIEDPITLETLQSLRPHSPNDGSYSDDTHYNLTSALIKSLRGSD
ENASIYYLARLIAGGENPEFIARRLVIFASEDIGNANPNALNLAASCLFSVKQIGYPEARIILSQCVIYLACSPKSNTAY
RAINQALDYIQKGSLYPIPKHLLPNAKDYLYPHDYNGYVKQDYLEKPLDLVSSQGIGFEKTLLEWLDKIRN

Nucleotide


Download         Length: 1176 bp        

>NTDB_id=573663 MPG39_RS04975 WP_245079907.1 1047580..1048755(+) (rarA) [Helicobacter pylori strain Hpfe122]
ATGAGCCTGACTTCGCTTTTAAACCCAAAAAGCCTAGAAGATTTTTTAGGCCAAAAGCATCTAGTAGGGAAAGACGCTCC
CTTATTTAAAGCCCTACAATCCAAACACTTCCCCCATGCCTTTTTCTATGGCCCTCCTGGCGTGGGTAAAACAAGCCTGG
CTCAAATCATCGCCCGCATGCTAGAGCGCCCCATTCTTTTATTCAATGCGACAGATTTCAAATTAGAGGATTTACGCCTT
AAGCTTAAAAATTACCAAAACACCCTTTTAAAACCGGTTGTTTTTATTGATGAAACCCACAGATTGAATAAAACCCAACA
AGAATTTTTACTCCCCATTATGGAAAAAGATCACGCTTTAATCTTAGGGGCTAGCACGCAAGATCCTAATTACAGCTTAA
GCCATGCGATCCGCTCAAGAAGTTTTATTTTTGAATTAACCCCCCTAAACAAGAGCGATTTAGACAAGCTTTGCACTAAA
GCTTTAACATTGCTCAAAAAACAAATAGAGCCTAGCGCTAAAACCTATCTTTTAAACAGCAGCACTGGCGATGCCAGAGC
GTTATTAAACCTTTTAGATTTGAGCGCTAAAATAGAAGATCCCATCACTTTAGAAACGCTGCAATCCTTACGGCCTCATA
GCCCAAATGACGGATCTTATAGCGATGATACGCATTATAATCTTACTAGCGCTTTAATCAAGTCTTTAAGGGGGAGCGAT
GAAAACGCTTCCATCTATTATCTGGCGCGCTTGATTGCTGGCGGGGAAAACCCGGAATTTATCGCCAGAAGGCTGGTGAT
TTTTGCGAGCGAAGATATTGGTAACGCTAACCCAAACGCTCTAAATTTAGCCGCTTCTTGCTTGTTTTCAGTCAAACAAA
TCGGCTACCCTGAAGCACGCATCATTTTAAGCCAATGCGTGATTTATCTGGCCTGTTCGCCCAAGTCTAACACGGCCTAT
AGAGCGATCAATCAGGCTTTGGATTATATTCAAAAAGGCTCACTCTACCCCATTCCTAAACACCTACTGCCTAACGCTAA
AGACTACCTTTACCCGCATGATTATAACGGCTATGTCAAACAAGATTATTTGGAAAAACCCCTAGATTTGGTTTCTTCTC
AAGGCATAGGGTTTGAAAAAACCCTTTTAGAATGGCTTGATAAGATAAGAAATTGA

Domains

Predicted by InterProScan.

MgsA AAA+ ATPase C terminal (MgsA_C)

(238-389)

AAA C-terminal domain (AAA_assoc_2)

(168-237)

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(7-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

37.379

100

0.394