Detailed information
Bioinformatically predicted
Overview
| Name | codY | Type | Regulator |
| Locus tag | KM389_RS18790 | Genome accession | NZ_CP076213 |
| Coordinates | 3620894..3621673 (-) | Length | 259 a.a. |
| NCBI ID | WP_000421288.1 | Uniprot ID | Q81WK7 |
| Organism | Bacillus anthracis strain A0777 | ||
| Function | repression of comK (predicted from homology) Competence regulation |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 3586572..3660496 | 3620894..3621673 | within | 0 |
Gene organization within MGE regions
Location: 3586572..3660496
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KM389_RS18640 (KM389_18660) | - | 3586916..3588586 (-) | 1671 | WP_000823085.1 | ribonuclease J | - |
| KM389_RS18645 (KM389_18665) | dapA | 3589352..3590230 (-) | 879 | WP_000564761.1 | 4-hydroxy-tetrahydrodipicolinate synthase | - |
| KM389_RS18650 (KM389_18670) | dapG | 3590242..3591474 (-) | 1233 | WP_000692470.1 | aspartate kinase | - |
| KM389_RS18655 (KM389_18675) | asd | 3591498..3592544 (-) | 1047 | WP_000414849.1 | aspartate-semialdehyde dehydrogenase | - |
| KM389_RS18660 (KM389_18680) | dpaB | 3592695..3593294 (-) | 600 | WP_001049484.1 | dipicolinate synthase subunit B | - |
| KM389_RS18665 (KM389_18685) | dpaA | 3593291..3594193 (-) | 903 | WP_000954726.1 | dipicolinic acid synthetase subunit A | - |
| KM389_RS18670 (KM389_18690) | - | 3594468..3594719 (-) | 252 | WP_001239752.1 | YlmC/YmxH family sporulation protein | - |
| KM389_RS18675 (KM389_18695) | - | 3594846..3596087 (-) | 1242 | WP_000592993.1 | pitrilysin family protein | - |
| KM389_RS18680 (KM389_18700) | - | 3596174..3597073 (-) | 900 | WP_000647529.1 | polysaccharide deacetylase family protein | - |
| KM389_RS18685 (KM389_18705) | pnp | 3597225..3599363 (-) | 2139 | WP_000076750.1 | polyribonucleotide nucleotidyltransferase | - |
| KM389_RS18690 (KM389_18710) | rpsO | 3599524..3599793 (-) | 270 | WP_001229392.1 | 30S ribosomal protein S15 | - |
| KM389_RS18695 (KM389_18715) | ribF | 3599894..3600865 (-) | 972 | WP_000766711.1 | bifunctional riboflavin kinase/FAD synthetase | - |
| KM389_RS18700 (KM389_18720) | truB | 3600909..3601832 (-) | 924 | WP_000399357.1 | tRNA pseudouridine(55) synthase TruB | - |
| KM389_RS18705 (KM389_18725) | rbfA | 3601919..3602275 (-) | 357 | WP_000776446.1 | 30S ribosome-binding factor RbfA | - |
| KM389_RS18710 (KM389_18730) | - | 3602291..3602572 (-) | 282 | WP_000582364.1 | DUF503 family protein | - |
| KM389_RS18715 (KM389_18735) | infB | 3602569..3604629 (-) | 2061 | WP_000036339.1 | translation initiation factor IF-2 | - |
| KM389_RS18720 (KM389_18740) | - | 3604634..3604945 (-) | 312 | WP_001286523.1 | YlxQ family RNA-binding protein | - |
| KM389_RS18725 (KM389_18745) | - | 3604946..3605218 (-) | 273 | WP_000071128.1 | YlxR family protein | - |
| KM389_RS18730 (KM389_18750) | nusA | 3605230..3606336 (-) | 1107 | WP_000102609.1 | transcription termination factor NusA | - |
| KM389_RS18735 (KM389_18755) | rimP | 3606354..3606824 (-) | 471 | WP_000359097.1 | ribosome maturation factor RimP | - |
| KM389_RS18740 (KM389_18760) | - | 3607157..3611458 (-) | 4302 | WP_000059985.1 | PolC-type DNA polymerase III | - |
| KM389_RS18745 (KM389_18765) | - | 3611583..3613283 (-) | 1701 | WP_000814312.1 | proline--tRNA ligase | - |
| KM389_RS18750 (KM389_18770) | rseP | 3613393..3614649 (-) | 1257 | WP_001090228.1 | RIP metalloprotease RseP | - |
| KM389_RS18755 (KM389_18775) | dxr | 3614666..3615808 (-) | 1143 | WP_000790359.1 | 1-deoxy-D-xylulose-5-phosphate reductoisomerase | - |
| KM389_RS18760 (KM389_18780) | cdsA | 3615832..3616623 (-) | 792 | WP_000813581.1 | phosphatidate cytidylyltransferase | - |
| KM389_RS18765 (KM389_18785) | uppS | 3616641..3617417 (-) | 777 | WP_000971303.1 | isoprenyl transferase | - |
| KM389_RS18770 (KM389_18790) | frr | 3617503..3618060 (-) | 558 | WP_042512007.1 | ribosome recycling factor | - |
| KM389_RS18775 (KM389_18795) | pyrH | 3618063..3618785 (-) | 723 | WP_000042663.1 | UMP kinase | - |
| KM389_RS18780 (KM389_18800) | tsf | 3618852..3619739 (-) | 888 | WP_001018581.1 | translation elongation factor Ts | - |
| KM389_RS18785 (KM389_18805) | rpsB | 3619843..3620544 (-) | 702 | WP_000111483.1 | 30S ribosomal protein S2 | - |
| KM389_RS18790 (KM389_18810) | codY | 3620894..3621673 (-) | 780 | WP_000421288.1 | GTP-sensing pleiotropic transcriptional regulator CodY | Regulator |
| KM389_RS18795 (KM389_18815) | hslU | 3621751..3623142 (-) | 1392 | WP_000550088.1 | ATP-dependent protease ATPase subunit HslU | - |
| KM389_RS18800 (KM389_18820) | hslV | 3623165..3623707 (-) | 543 | WP_000526272.1 | ATP-dependent protease proteolytic subunit HslV | - |
| KM389_RS18805 (KM389_18825) | xerC | 3623750..3624649 (-) | 900 | WP_001101226.1 | tyrosine recombinase XerC | - |
| KM389_RS18810 (KM389_18830) | trmFO | 3624715..3626019 (-) | 1305 | WP_003161605.1 | FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO | - |
| KM389_RS18815 (KM389_18835) | topA | 3626070..3628148 (-) | 2079 | WP_001286969.1 | type I DNA topoisomerase | - |
| KM389_RS18820 (KM389_18840) | dprA | 3628293..3629161 (-) | 869 | Protein_3680 | DNA-processing protein DprA | - |
| KM389_RS18825 (KM389_18845) | sucD | 3629249..3630151 (-) | 903 | WP_000115178.1 | succinate--CoA ligase subunit alpha | - |
| KM389_RS18830 (KM389_18850) | sucC | 3630172..3631332 (-) | 1161 | WP_001020786.1 | ADP-forming succinate--CoA ligase subunit beta | - |
| KM389_RS18835 (KM389_18855) | rnhB | 3631526..3632299 (-) | 774 | WP_001174712.1 | ribonuclease HII | - |
| KM389_RS18840 (KM389_18860) | ylqF | 3632351..3633241 (-) | 891 | WP_000236686.1 | ribosome biogenesis GTPase YlqF | - |
| KM389_RS18845 (KM389_18865) | lepB | 3633262..3633813 (-) | 552 | WP_000711857.1 | signal peptidase I | - |
| KM389_RS18850 (KM389_18870) | rplS | 3633915..3634259 (-) | 345 | WP_001186516.1 | 50S ribosomal protein L19 | - |
| KM389_RS18855 (KM389_18875) | trmD | 3634406..3635140 (-) | 735 | WP_000686892.1 | tRNA (guanosine(37)-N1)-methyltransferase TrmD | - |
| KM389_RS18860 (KM389_18880) | rimM | 3635140..3635655 (-) | 516 | WP_000170269.1 | ribosome maturation factor RimM | - |
| KM389_RS18865 (KM389_18885) | - | 3635776..3636003 (-) | 228 | WP_000737398.1 | KH domain-containing protein | - |
| KM389_RS18870 (KM389_18890) | rpsP | 3636018..3636290 (-) | 273 | WP_000268750.1 | 30S ribosomal protein S16 | - |
| KM389_RS18875 (KM389_18895) | ffh | 3636391..3637740 (-) | 1350 | WP_000863456.1 | signal recognition particle protein | - |
| KM389_RS18880 (KM389_18900) | - | 3637753..3638085 (-) | 333 | WP_000891062.1 | putative DNA-binding protein | - |
| KM389_RS18885 (KM389_18905) | ftsY | 3638219..3639208 (-) | 990 | WP_000007650.1 | signal recognition particle-docking protein FtsY | - |
| KM389_RS18890 (KM389_18910) | smc | 3639224..3642793 (-) | 3570 | WP_000478985.1 | chromosome segregation protein SMC | - |
| KM389_RS18895 (KM389_18915) | rncS | 3642940..3643677 (-) | 738 | WP_001146873.1 | ribonuclease III | - |
| KM389_RS18900 (KM389_18920) | acpP | 3643736..3643969 (-) | 234 | WP_000786062.1 | acyl carrier protein | - |
| KM389_RS18905 (KM389_18925) | fabG | 3644039..3644779 (-) | 741 | WP_000911782.1 | 3-oxoacyl-[acyl-carrier-protein] reductase | - |
| KM389_RS18910 (KM389_18930) | fabD | 3644779..3645723 (-) | 945 | WP_000516958.1 | ACP S-malonyltransferase | - |
| KM389_RS18915 (KM389_18935) | plsX | 3645738..3646730 (-) | 993 | WP_000684111.1 | phosphate acyltransferase PlsX | - |
| KM389_RS18920 (KM389_18940) | fapR | 3646727..3647320 (-) | 594 | WP_000747352.1 | transcription factor FapR | - |
| KM389_RS18925 (KM389_18945) | recG | 3647409..3649457 (-) | 2049 | WP_001006884.1 | ATP-dependent DNA helicase RecG | - |
| KM389_RS18930 (KM389_18950) | - | 3649747..3651423 (-) | 1677 | WP_000027136.1 | DAK2 domain-containing protein | - |
| KM389_RS18935 (KM389_18955) | - | 3651446..3651808 (-) | 363 | WP_000021109.1 | Asp23/Gls24 family envelope stress response protein | - |
| KM389_RS18940 (KM389_18960) | rpmB | 3652187..3652375 (+) | 189 | WP_000124778.1 | 50S ribosomal protein L28 | - |
| KM389_RS18945 (KM389_18965) | spoVM | 3652448..3652528 (-) | 81 | WP_001213599.1 | stage V sporulation protein SpoVM | - |
| KM389_RS18950 (KM389_18970) | - | 3652595..3653275 (-) | 681 | WP_025388434.1 | thiamine diphosphokinase | - |
| KM389_RS18955 (KM389_18975) | rpe | 3653375..3654019 (-) | 645 | WP_000589966.1 | ribulose-phosphate 3-epimerase | - |
| KM389_RS18960 (KM389_18980) | rsgA | 3654022..3654903 (-) | 882 | WP_001113935.1 | ribosome small subunit-dependent GTPase A | - |
| KM389_RS18965 (KM389_18985) | prkC | 3655172..3657145 (-) | 1974 | WP_000904759.1 | serine/threonine protein kinase PrkC | - |
| KM389_RS18970 (KM389_18990) | - | 3657154..3657906 (-) | 753 | WP_000648699.1 | Stp1/IreP family PP2C-type Ser/Thr phosphatase | - |
| KM389_RS18975 (KM389_18995) | rlmN | 3657911..3658999 (-) | 1089 | WP_000450543.1 | 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN | - |
| KM389_RS18980 (KM389_19000) | rsmB | 3659004..3660338 (-) | 1335 | WP_001249680.1 | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB | - |
Sequence
Protein
Download Length: 259 a.a. Molecular weight: 28774.05 Da Isoelectric Point: 4.7947
>NTDB_id=573620 KM389_RS18790 WP_000421288.1 3620894..3621673(-) (codY) [Bacillus anthracis strain A0777]
MELLAKTRKLNALLQSAAGKPVNFREMSDTMCEVIEANVFVVSRRGKLLGYAIHQQIENERMKQMLAERQFPEEYTQSLF
NITETSSNLDVNSAYTAFPVENKELFGQGLTTIVPIVGGGERLGTLVLARLGQEFLDDDLILAEYSSTVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELNGTEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNDKFLHELAKLKTN
MELLAKTRKLNALLQSAAGKPVNFREMSDTMCEVIEANVFVVSRRGKLLGYAIHQQIENERMKQMLAERQFPEEYTQSLF
NITETSSNLDVNSAYTAFPVENKELFGQGLTTIVPIVGGGERLGTLVLARLGQEFLDDDLILAEYSSTVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELNGTEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNDKFLHELAKLKTN
Nucleotide
Download Length: 780 bp
>NTDB_id=573620 KM389_RS18790 WP_000421288.1 3620894..3621673(-) (codY) [Bacillus anthracis strain A0777]
ATGGAATTATTAGCAAAAACAAGAAAATTAAATGCGTTATTACAGAGCGCAGCAGGAAAGCCTGTAAACTTTAGAGAAAT
GTCTGACACAATGTGTGAAGTAATCGAAGCGAACGTATTCGTAGTAAGTCGTCGTGGTAAATTACTAGGTTATGCAATTC
ACCAACAAATCGAGAATGAGCGTATGAAACAAATGCTTGCAGAACGTCAATTCCCAGAAGAGTATACACAAAGCTTATTC
AACATTACAGAAACATCTTCAAACTTAGATGTAAACAGTGCTTACACAGCATTCCCAGTAGAAAATAAAGAATTATTTGG
TCAAGGTTTAACTACAATCGTACCGATCGTTGGTGGCGGTGAGCGTCTAGGTACATTAGTTTTAGCTCGTCTTGGTCAAG
AGTTCTTAGATGATGATTTAATTCTTGCTGAGTACAGCTCAACTGTTGTAGGTATGGAAATTTTACGTGAAAAAGCAGAA
GAAATCGAAGAAGAAGCACGTAGCAAAGCTGTTGTTCAAATGGCGATCAGCTCATTATCTTACAGTGAATTAGAAGCAAT
CGAGCACATCTTCGAAGAATTAAACGGAACAGAAGGTTTACTTGTTGCAAGTAAAATTGCTGACCGCGTAGGAATCACTC
GTTCGGTAATCGTAAATGCACTTCGTAAATTAGAAAGTGCTGGTGTAATTGAGTCGCGTTCTTTAGGTATGAAAGGAACA
TACATTAAAGTATTAAACGACAAATTCTTACATGAACTTGCTAAATTAAAAACAAACTAA
ATGGAATTATTAGCAAAAACAAGAAAATTAAATGCGTTATTACAGAGCGCAGCAGGAAAGCCTGTAAACTTTAGAGAAAT
GTCTGACACAATGTGTGAAGTAATCGAAGCGAACGTATTCGTAGTAAGTCGTCGTGGTAAATTACTAGGTTATGCAATTC
ACCAACAAATCGAGAATGAGCGTATGAAACAAATGCTTGCAGAACGTCAATTCCCAGAAGAGTATACACAAAGCTTATTC
AACATTACAGAAACATCTTCAAACTTAGATGTAAACAGTGCTTACACAGCATTCCCAGTAGAAAATAAAGAATTATTTGG
TCAAGGTTTAACTACAATCGTACCGATCGTTGGTGGCGGTGAGCGTCTAGGTACATTAGTTTTAGCTCGTCTTGGTCAAG
AGTTCTTAGATGATGATTTAATTCTTGCTGAGTACAGCTCAACTGTTGTAGGTATGGAAATTTTACGTGAAAAAGCAGAA
GAAATCGAAGAAGAAGCACGTAGCAAAGCTGTTGTTCAAATGGCGATCAGCTCATTATCTTACAGTGAATTAGAAGCAAT
CGAGCACATCTTCGAAGAATTAAACGGAACAGAAGGTTTACTTGTTGCAAGTAAAATTGCTGACCGCGTAGGAATCACTC
GTTCGGTAATCGTAAATGCACTTCGTAAATTAGAAAGTGCTGGTGTAATTGAGTCGCGTTCTTTAGGTATGAAAGGAACA
TACATTAAAGTATTAAACGACAAATTCTTACATGAACTTGCTAAATTAAAAACAAACTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| codY | Bacillus subtilis subsp. subtilis str. 168 |
81.081 |
100 |
0.811 |
| codY | Lactococcus lactis subsp. lactis strain DGCC12653 |
46.667 |
98.456 |
0.459 |