Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   MPG66_RS04860 Genome accession   NZ_CP094056
Coordinates   1021686..1022861 (+) Length   391 a.a.
NCBI ID   WP_245024385.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe124     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1016686..1027861
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG66_RS04835 (MPG66_04835) - 1016974..1017870 (+) 897 WP_000697547.1 OriC activity response regulator -
  MPG66_RS04840 (MPG66_04840) - 1018095..1018961 (+) 867 WP_245025804.1 5'-3' exonuclease -
  MPG66_RS04845 (MPG66_04845) - 1019024..1020274 (-) 1251 WP_001199616.1 hypothetical protein -
  MPG66_RS04850 (MPG66_04850) - 1020442..1021308 (+) 867 WP_096530496.1 DnaJ C-terminal domain-containing protein -
  MPG66_RS04855 (MPG66_04855) - 1021318..1021689 (+) 372 WP_000332994.1 helix-turn-helix transcriptional regulator -
  MPG66_RS04860 (MPG66_04860) rarA 1021686..1022861 (+) 1176 WP_245024385.1 replication-associated recombination protein A Machinery gene
  MPG66_RS04865 (MPG66_04865) fur 1023020..1023472 (+) 453 WP_000824985.1 ferric iron uptake transcriptional regulator -
  MPG66_RS04870 (MPG66_04870) - 1023492..1023989 (-) 498 WP_000780291.1 DUF2147 domain-containing protein -
  MPG66_RS04875 (MPG66_04875) - 1023986..1024522 (-) 537 WP_245024387.1 YhcH/YjgK/YiaL family protein -
  MPG66_RS04880 (MPG66_04880) fliY 1024550..1025413 (-) 864 WP_245024389.1 flagellar motor switch protein FliY -
  MPG66_RS04885 (MPG66_04885) fliM 1025417..1026481 (-) 1065 WP_245024391.1 flagellar motor switch protein FliM -
  MPG66_RS04890 (MPG66_04890) - 1026474..1027250 (-) 777 WP_180459497.1 RNA polymerase sigma factor FliA -
  MPG66_RS04895 (MPG66_04895) - 1027228..1027542 (-) 315 WP_000867999.1 hypothetical protein -

Sequence

Protein


Download         Length: 391 a.a.        Molecular weight: 43876.52 Da        Isoelectric Point: 8.3996

>NTDB_id=573586 MPG66_RS04860 WP_245024385.1 1021686..1022861(+) (rarA) [Helicobacter pylori strain Hpfe124]
MSLTSLLNPKSLEDFLGQEHLIGKDAPLFKALQSKHFPHAFFYGPPGVGKTSLAQIIARMLERPILLFNATDFKLEDLRL
KLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIMEKDHALILGASTQDPNYSLSHAIRSRSFIFELTPLKKSDLDKLCAK
ALTLLKKQIEPSAKTYLLNNSAGDARALLNLLDLSAKIENPITLETLQSLRPHSPNDGSYSDDTHYNLTSALIKSLRGSD
ENASIYYLARLIAGGENPEFIARRLVVFASEDIGNANPNALNLAASCLFSVKQIGYPEARIILSQCVIYLACSPKSNTAY
RAINQALDYIQKGSLYPIPKHLLPNAKDYLYPHDYNGYVKQDYLEKPLDLVSSQGIGFEKTLLEWLDKIRN

Nucleotide


Download         Length: 1176 bp        

>NTDB_id=573586 MPG66_RS04860 WP_245024385.1 1021686..1022861(+) (rarA) [Helicobacter pylori strain Hpfe124]
ATGAGCCTGACTTCGCTTTTAAACCCAAAAAGCCTAGAAGATTTTTTAGGCCAAGAGCATTTAATAGGGAAAGACGCCCC
CTTATTTAAAGCCCTACAATCCAAACACTTCCCCCACGCCTTTTTCTATGGCCCTCCTGGCGTGGGAAAAACAAGCCTGG
CTCAAATCATCGCCCGCATGCTAGAGCGCCCCATTCTTTTATTCAATGCGACGGATTTCAAATTAGAGGATTTACGCCTT
AAGCTTAAAAATTACCAAAACACCCTTTTAAAACCGGTTGTTTTTATTGATGAAACCCACAGATTGAATAAAACCCAACA
AGAATTTTTACTCCCCATTATGGAGAAAGATCACGCTTTAATCTTAGGGGCTAGCACGCAAGATCCTAATTACAGCCTAA
GCCATGCGATCCGCTCAAGAAGTTTTATTTTTGAATTAACCCCCCTAAAAAAGAGCGATTTAGACAAACTTTGCGCTAAA
GCTTTAACATTACTCAAAAAACAAATAGAGCCTAGCGCTAAAACCTATCTTTTAAACAACAGCGCTGGCGATGCTAGAGC
GTTATTAAACCTTTTAGATTTGAGCGCTAAAATAGAAAATCCTATCACTTTAGAAACGCTGCAATCCTTACGGCCTCATA
GCCCAAATGACGGATCTTATAGCGATGATACGCATTATAATCTTACTAGTGCATTAATCAAGTCTTTAAGAGGGAGCGAT
GAAAACGCTTCCATCTATTATCTGGCGCGCTTGATTGCTGGCGGGGAAAACCCAGAATTTATCGCCAGAAGGCTGGTGGT
TTTTGCGAGCGAAGATATTGGTAACGCTAACCCAAACGCCCTTAATTTAGCTGCTTCTTGCTTGTTTTCAGTCAAACAAA
TCGGCTACCCTGAAGCACGCATCATTTTAAGCCAATGCGTGATTTATCTGGCTTGTTCGCCCAAGTCTAACACGGCTTAT
AGAGCGATCAATCAGGCTTTGGATTATATTCAAAAAGGCTCACTCTACCCCATTCCTAAACACCTGCTGCCTAACGCTAA
AGACTACCTTTACCCGCATGATTATAACGGCTATGTCAAACAAGATTATTTGGAAAAACCCCTAGATTTGGTTTCTTCTC
AAGGCATAGGGTTTGAAAAAACCCTTTTAGAATGGCTTGATAAGATAAGAAATTGA

Domains

Predicted by InterProScan.

AAA C-terminal domain (AAA_assoc_2)

(168-237)

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(7-117)

MgsA AAA+ ATPase C terminal (MgsA_C)

(238-389)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

37.379

100

0.394