Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   MPF85_RS02530 Genome accession   NZ_CP094054
Coordinates   519362..520537 (-) Length   391 a.a.
NCBI ID   WP_245013779.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe125     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 514362..525537
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPF85_RS02495 (MPF85_02495) - 514680..514994 (+) 315 WP_000867999.1 hypothetical protein -
  MPF85_RS02500 (MPF85_02500) - 514972..515748 (+) 777 WP_000602369.1 RNA polymerase sigma factor FliA -
  MPF85_RS02505 (MPF85_02505) fliM 515741..516805 (+) 1065 WP_001919332.1 flagellar motor switch protein FliM -
  MPF85_RS02510 (MPF85_02510) fliY 516809..517672 (+) 864 WP_245013777.1 flagellar motor switch protein FliY -
  MPF85_RS02515 (MPF85_02515) - 517700..518236 (+) 537 WP_245013778.1 YhcH/YjgK/YiaL family protein -
  MPF85_RS02520 (MPF85_02520) - 518233..518730 (+) 498 WP_220826703.1 DUF2147 domain-containing protein -
  MPF85_RS02525 (MPF85_02525) fur 518750..519202 (-) 453 WP_000824985.1 ferric iron uptake transcriptional regulator -
  MPF85_RS02530 (MPF85_02530) rarA 519362..520537 (-) 1176 WP_245013779.1 replication-associated recombination protein A Machinery gene
  MPF85_RS02535 (MPF85_02535) - 520534..520905 (-) 372 WP_000332994.1 helix-turn-helix transcriptional regulator -
  MPF85_RS02540 (MPF85_02540) - 520915..521781 (-) 867 WP_000045783.1 DnaJ family protein -
  MPF85_RS02545 (MPF85_02545) - 521949..523199 (+) 1251 WP_245013780.1 outer membrane family protein -
  MPF85_RS02550 (MPF85_02550) - 523289..524155 (-) 867 WP_180412601.1 5'-3' exonuclease -
  MPF85_RS02555 (MPF85_02555) - 524381..525277 (-) 897 WP_000697547.1 OriC activity response regulator -

Sequence

Protein


Download         Length: 391 a.a.        Molecular weight: 43803.44 Da        Isoelectric Point: 8.0462

>NTDB_id=573544 MPF85_RS02530 WP_245013779.1 519362..520537(-) (rarA) [Helicobacter pylori strain Hpfe125]
MSLTSLLNPKSLEDFLGQEHLVGKDAPLFKALQSKHFPHAFFYGPPGVGKTSLAQIIARMLERPILLFNATDFKLEDLRL
KLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIMEKDHALILGASTQDPNYSLSHAIRSRSFIFELTPLKKSDLDKLCAK
ALTLLKKQIEPSAKTYLLNNSAGDARALLNLLDLSAKIEDPITLETLQSLRPHSPNDGSYSDDTHYNLTSALIKSLRGSD
ENASIYYLARLIAGGENPEFIARRLVVFASEDIGNANPNALNLAASCLFSVKQIGYPEARIILSQCVIYLACSPKSNTAY
RAINQALDCIQKGSLYPIPKHLLPNAKDYLYPHDYNGYVKQDYLEKPLDLVSSQGIGFEKTLLEWLDKIRN

Nucleotide


Download         Length: 1176 bp        

>NTDB_id=573544 MPF85_RS02530 WP_245013779.1 519362..520537(-) (rarA) [Helicobacter pylori strain Hpfe125]
ATGAGCCTGACTTCGCTTTTAAACCCAAAAAGCCTAGAAGATTTTTTAGGCCAAGAGCATCTAGTAGGGAAAGACGCCCC
CTTATTTAAAGCCCTACAATCCAAACACTTCCCCCATGCCTTTTTCTATGGCCCTCCTGGCGTGGGTAAAACAAGCCTGG
CTCAAATCATCGCCCGCATGCTAGAGCGCCCCATTCTTTTATTCAATGCGACGGATTTCAAATTAGAGGATTTACGCCTT
AAACTTAAAAATTACCAAAACACCCTTTTAAAACCGGTTGTTTTTATTGATGAAACCCACAGATTGAATAAAACCCAACA
AGAATTTTTACTCCCCATTATGGAAAAAGATCACGCTTTAATCTTAGGGGCTAGCACGCAAGATCCTAATTACAGCCTAA
GCCATGCGATCCGCTCAAGAAGTTTTATTTTTGAATTAACCCCCCTAAAAAAGAGCGATTTAGACAAACTTTGCGCTAAA
GCTTTAACATTACTCAAAAAACAAATAGAGCCTAGCGCTAAAACCTATCTTTTAAACAACAGCGCTGGCGATGCTAGAGC
GTTATTAAACCTTTTAGATTTGAGCGCTAAGATAGAAGATCCTATCACTTTAGAAACGCTGCAATCCTTACGGCCTCATA
GCCCAAATGACGGATCTTATAGCGATGATACGCATTATAATCTTACTAGCGCATTAATAAAGTCTTTAAGAGGGAGCGAT
GAAAACGCTTCCATCTATTATCTAGCACGCTTGATTGCTGGCGGGGAAAACCCGGAATTTATCGCCAGAAGGCTGGTGGT
TTTTGCGAGCGAAGATATTGGTAACGCTAACCCAAACGCCCTAAATTTAGCCGCTTCTTGCTTGTTTTCAGTCAAACAAA
TCGGCTACCCTGAAGCGCGCATCATTTTAAGCCAATGCGTGATTTATCTGGCTTGTTCGCCCAAGTCTAACACGGCTTAT
AGAGCGATCAACCAGGCTTTGGATTGTATTCAAAAAGGCTCACTCTACCCCATTCCTAAACACCTACTGCCTAACGCTAA
AGACTACCTTTACCCGCATGATTATAACGGATATGTCAAACAAGATTATTTGGAAAAACCCCTAGATTTGGTTTCTTCTC
AAGGCATAGGGTTTGAAAAAACCCTTTTAGAATGGCTTGATAAAATAAGAAATTGA

Domains

Predicted by InterProScan.

MgsA AAA+ ATPase C terminal (MgsA_C)

(238-389)

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(7-117)

AAA C-terminal domain (AAA_assoc_2)

(168-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

37.621

100

0.396