Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   MPF87_RS05070 Genome accession   NZ_CP094052
Coordinates   1070967..1072142 (+) Length   391 a.a.
NCBI ID   WP_245012378.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe126     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1065967..1077142
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPF87_RS05045 (MPF87_05045) - 1066228..1067124 (+) 897 WP_154455554.1 OriC activity response regulator -
  MPF87_RS05050 (MPF87_05050) - 1067349..1068215 (+) 867 WP_245013077.1 5'-3' exonuclease -
  MPF87_RS05055 (MPF87_05055) - 1068305..1069555 (-) 1251 WP_245012376.1 outer membrane family protein -
  MPF87_RS05060 (MPF87_05060) - 1069723..1070589 (+) 867 WP_245012377.1 DnaJ C-terminal domain-containing protein -
  MPF87_RS05065 (MPF87_05065) - 1070599..1070970 (+) 372 WP_000332993.1 helix-turn-helix transcriptional regulator -
  MPF87_RS05070 (MPF87_05070) rarA 1070967..1072142 (+) 1176 WP_245012378.1 replication-associated recombination protein A Machinery gene
  MPF87_RS05075 (MPF87_05075) fur 1072302..1072754 (+) 453 WP_000824992.1 ferric iron uptake transcriptional regulator -
  MPF87_RS05080 (MPF87_05080) - 1072773..1073270 (-) 498 WP_000780271.1 DUF2147 domain-containing protein -
  MPF87_RS05085 (MPF87_05085) - 1073267..1073803 (-) 537 WP_245012379.1 YhcH/YjgK/YiaL family protein -
  MPF87_RS05090 (MPF87_05090) fliY 1073831..1074694 (-) 864 WP_245012380.1 flagellar motor switch protein FliY -
  MPF87_RS05095 (MPF87_05095) fliM 1074698..1075762 (-) 1065 WP_000763605.1 flagellar motor switch protein FliM -
  MPF87_RS05100 (MPF87_05100) - 1075755..1076531 (-) 777 WP_120928552.1 RNA polymerase sigma factor FliA -
  MPF87_RS05105 (MPF87_05105) - 1076509..1076823 (-) 315 WP_000868000.1 hypothetical protein -

Sequence

Protein


Download         Length: 391 a.a.        Molecular weight: 43875.50 Da        Isoelectric Point: 7.7629

>NTDB_id=573502 MPF87_RS05070 WP_245012378.1 1070967..1072142(+) (rarA) [Helicobacter pylori strain Hpfe126]
MSLTSLLNPKSLEDFLGQEHLIGKDAPLFKALQSKHFPHAFFYGPPGVGKTSLAQIIARMLERPILLFNATDFKLEDLRL
KLKNYQNTLLKPVVFIDEIHRLNKTQQEFLLPIMEKDHALILGASTQDPNYSLSHAIRSRSFIFELTPLNKSDLDKLCTK
ALTLLKKQIEPSAKTYLLNNSAGDARALLNLLDLSAKIEDPITLETLQSLRPHSPNDGSYSDDTHYNLTSALIKSLRGSD
ENASIYYLARLIAGGENPEFIARRLVVFASEDIGNANPNALNLATSCLFSVKQIGYPEARIILSQCVIYLACSPKSNTAY
RAINQALDCIQKGSLYPIPKHLLPNAKDYLYPHDYNGYVKQDYLEKPLDLVSSQGIGFEKTLLEWLDKIRN

Nucleotide


Download         Length: 1176 bp        

>NTDB_id=573502 MPF87_RS05070 WP_245012378.1 1070967..1072142(+) (rarA) [Helicobacter pylori strain Hpfe126]
ATGAGCCTGACTTCGCTTTTAAACCCAAAAAGCCTAGAAGATTTTTTAGGCCAAGAGCATCTAATAGGCAAAGACGCTCC
CTTATTTAAAGCCCTACAATCCAAACACTTCCCCCATGCCTTTTTCTATGGCCCTCCTGGCGTAGGTAAAACAAGCCTGG
CTCAAATCATCGCCCGCATGCTAGAGCGCCCCATTCTTTTATTCAATGCGACGGATTTCAAATTAGAGGATTTACGCCTT
AAGCTTAAAAATTACCAAAACACCCTTTTAAAACCCGTTGTTTTTATTGATGAAATCCACAGATTGAATAAAACCCAACA
AGAATTTTTACTCCCCATTATGGAAAAAGATCACGCTTTAATCTTAGGGGCTAGCACGCAAGATCCCAATTACAGCCTAA
GCCATGCGATCCGCTCAAGAAGTTTTATTTTTGAATTAACCCCCCTAAACAAGAGCGATTTAGACAAGCTTTGCACTAAA
GCTTTAACATTACTCAAAAAACAAATAGAGCCTAGTGCTAAAACCTATCTTTTAAACAACAGCGCTGGCGATGCCAGAGC
GTTATTAAACCTTTTAGATTTGAGCGCTAAAATAGAAGATCCTATCACTTTAGAAACGCTGCAATCCTTACGGCCTCATA
GCCCAAATGACGGATCTTATAGCGATGATACGCATTATAATCTTACTAGCGCATTAATTAAGTCTTTAAGAGGGAGCGAT
GAAAACGCTTCCATCTATTATCTGGCGCGTTTGATTGCTGGCGGGGAAAACCCGGAATTTATCGCCAGAAGGTTGGTGGT
TTTTGCGAGCGAAGATATTGGTAACGCTAACCCAAACGCCCTAAATTTAGCCACTTCTTGCTTGTTTTCAGTCAAACAAA
TCGGCTACCCTGAAGCGCGCATCATTTTAAGCCAATGCGTGATTTATCTGGCTTGTTCGCCCAAGTCTAACACGGCTTAT
AGAGCGATCAACCAGGCTTTGGATTGTATTCAAAAAGGCTCACTCTACCCCATTCCTAAACACCTGCTGCCTAACGCTAA
AGACTACCTTTACCCGCATGATTATAACGGCTATGTCAAACAAGATTATTTGGAAAAACCCCTAGATTTGGTTTCTTCTC
AAGGCATAGGGTTTGAAAAAACCCTTTTAGAATGGCTTGATAAGATAAGAAATTGA

Domains

Predicted by InterProScan.

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(7-117)

AAA C-terminal domain (AAA_assoc_2)

(168-237)

MgsA AAA+ ATPase C terminal (MgsA_C)

(238-389)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

37.379

100

0.394