Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB3   Type   Machinery gene
Locus tag   MPG10_RS06760 Genome accession   NZ_CP094051
Coordinates   1392179..1392445 (-) Length   88 a.a.
NCBI ID   WP_245060970.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe127     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1387179..1397445
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG10_RS06730 (MPG10_06730) - 1387992..1388180 (+) 189 Protein_1313 DUF1104 domain-containing protein -
  MPG10_RS07780 - 1388143..1389772 (-) 1630 Protein_1314 type IA DNA topoisomerase -
  MPG10_RS07785 - 1389775..1392132 (-) 2358 Protein_1315 VirB4 family type IV secretion/conjugal transfer ATPase -
  MPG10_RS06760 (MPG10_06760) comB3 1392179..1392445 (-) 267 WP_245060970.1 virB3 type IV secretion protein Machinery gene
  MPG10_RS07790 - 1392446..1392743 (-) 298 Protein_1317 virB2 type IV secretion protein -
  MPG10_RS06765 (MPG10_06765) - 1392740..1394263 (-) 1524 WP_245060972.1 hypothetical protein -
  MPG10_RS06770 (MPG10_06770) - 1394270..1394563 (-) 294 WP_245040771.1 hypothetical protein -
  MPG10_RS06775 (MPG10_06775) - 1394583..1395363 (-) 781 Protein_1320 hypothetical protein -

Sequence

Protein


Download         Length: 88 a.a.        Molecular weight: 10196.01 Da        Isoelectric Point: 5.5615

>NTDB_id=573474 MPG10_RS06760 WP_245060970.1 1392179..1392445(-) (comB3) [Helicobacter pylori strain Hpfe127]
MALHIVCVESINIREISKRETFLGLNLDSWIVSFLMSAWLLSFQPLYAMGLMASCVFVFYILEFFNEDITAILHAFFTLR
TGARNYYA

Nucleotide


Download         Length: 267 bp        

>NTDB_id=573474 MPG10_RS06760 WP_245060970.1 1392179..1392445(-) (comB3) [Helicobacter pylori strain Hpfe127]
ATGGCATTGCATATTGTTTGTGTTGAAAGTATCAACATTAGAGAAATCAGCAAAAGAGAAACTTTTTTGGGATTAAACTT
GGATAGTTGGATTGTTAGTTTCTTAATGTCGGCATGGTTACTTTCATTCCAACCACTTTATGCTATGGGTTTAATGGCTA
GTTGTGTGTTTGTATTCTACATTTTAGAATTTTTTAATGAAGATATAACAGCCATTTTGCATGCGTTTTTCACATTAAGG
ACAGGAGCTAGAAATTATTATGCTTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB3 Helicobacter pylori 26695

40.964

94.318

0.386